Tc02v2_t002490.2

Overview
NameTc02v2_t002490.2
Unique NameTc02v2_t002490.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1272
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 44 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
Productbranched-chain-amino-acid aminotransferase 6, transcript variant X2
NoteBranched-chain-amino-acid aminotransferase 6
Cross References
External references for this mRNA
DatabaseAccession
GeneID18607290
GenbankXM_007041369.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g002490Tc02v2_g002490Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p002490.2Tc02v2_p002490.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto84000auto84000Theobroma cacaoexon
exon-auto84001auto84001Theobroma cacaoexon
exon-auto84002auto84002Theobroma cacaoexon
exon-auto84003auto84003Theobroma cacaoexon
exon-auto84004auto84004Theobroma cacaoexon
exon-auto84005auto84005Theobroma cacaoexon
exon-auto84006auto84006Theobroma cacaoexon
exon-auto84007auto84007Theobroma cacaoexon
exon-auto84008auto84008Theobroma cacaoexon
exon-auto84009auto84009Theobroma cacaoexon
exon-auto84010auto84010Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto84011auto84011Theobroma cacaoCDS
CDS-auto84012auto84012Theobroma cacaoCDS
CDS-auto84013auto84013Theobroma cacaoCDS
CDS-auto84014auto84014Theobroma cacaoCDS
CDS-auto84015auto84015Theobroma cacaoCDS
CDS-auto84016auto84016Theobroma cacaoCDS
CDS-auto84017auto84017Theobroma cacaoCDS
CDS-auto84018auto84018Theobroma cacaoCDS
CDS-auto84019auto84019Theobroma cacaoCDS
CDS-auto84020auto84020Theobroma cacaoCDS
CDS-auto84021auto84021Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t002490.2 ID=Tc02v2_t002490.2|Name=Tc02v2_t002490.2|organism=Theobroma cacao|type=mRNA|length=1272bp
ATGAATTTGCAGGTGATCTTGCAGAAGATTCATATCATAGATTTCCAGGT
GTTTCTTATTGCCAGAAGAGTTTCTAGGTCATTTCTAAAGCTCAATATGT
TTTTGAGTAGGCAAGCCATGTTTGGTCTAAGCATTTGCGCTAGAAATGTG
AATCAACTTTCAAGAATTGAAAGCCTCCTGTCAAAGCCAAAGCTAAGATC
TTACGCCAGGCCTGTCACGACTGCACTGGAAAATTATGAATCCAGCATTT
ACAGCGGCAAGACAGAATATGCCAATGTCAATTGGGATGAACTTGGATTT
GCTCTAACTAAAACAGATTACATGTACGTAATGAATTGCTCTAAAGACGA
AGAAATCTTTTCCGAAGGAATCCTCACTCGTTTTGGAAACATCGAGCTGT
GCCCTTCATCTGGAATATTGAACTATGGCCAGGGATTATTCGAGGGACTG
AAAGCGTATAGGAAGGAAGATGACGGAATTCTGCTGTTCCGGCCGGAAGA
GAATGCCCTGAGGATGAAGATGGGTGCGGATAGAATGTGCATGCCATCGC
CAACAGTTGAGCAATTCATAGATGCTGTTAAAAGGACTGTCCTGGCCAAC
AAGCGATGGGTACCACCGCATGGGAGAGGGGCACTGTATATCAGGCCACT
GCTCATGGGAACTGGCCCAAATCTGGGAGTTAAGCCAGCATCCGAGTACA
CATTCTTAGCTTATGCTTCCCCCGTGGGCAATTATCATAAGAGTCCTATG
AACTTGGTCGTTGAAGACAAGGTCTGTCGTGCTGCTCCTGGTGGTACAGG
AGGAGTCAAAGCTGTCACTAACTATTCACCAATCTACAAGACATTAGGTC
AAGCAAAAGCCAGAGGATTCACTGATGTCTTGTTTCTTGATGCATTGACT
GGAAGAAACATCGAGGAAGGTTCTGCATTCAACATCTTCGTTCTCAAGGG
AAATGTTATCTCTACTCCAACAGCACACGGGACTATTCTCCCAGGAATCA
CAAGAAAAAGCATCATCGAAATCGCATCAACTCTTGGTTACCAGGTTGAG
GAACGAGATGTTCCGATCGAGGAGGTATTCGATGCTGAAGAAGTCTTCTG
CACAGGAACAGCTATGGTTCTCAAGTCTGTTGTAAGTATAACCTACCAGG
GTAAAAGGATTGAATACAAAATGGGAGAAGAACCAGTGGCTCAGAAATTG
CATGCAACATTAACAGGAATTCAAACTGGTCTTATCGAGGACAAGATGGG
ATGGACAGTTGAGGTCGATTAG
back to top

protein sequence of Tc02v2_p002490.2

>Tc02v2_p002490.2 ID=Tc02v2_p002490.2|Name=Tc02v2_p002490.2|organism=Theobroma cacao|type=polypeptide|length=424bp
MNLQVILQKIHIIDFQVFLIARRVSRSFLKLNMFLSRQAMFGLSICARNV
NQLSRIESLLSKPKLRSYARPVTTALENYESSIYSGKTEYANVNWDELGF
ALTKTDYMYVMNCSKDEEIFSEGILTRFGNIELCPSSGILNYGQGLFEGL
KAYRKEDDGILLFRPEENALRMKMGADRMCMPSPTVEQFIDAVKRTVLAN
KRWVPPHGRGALYIRPLLMGTGPNLGVKPASEYTFLAYASPVGNYHKSPM
NLVVEDKVCRAAPGGTGGVKAVTNYSPIYKTLGQAKARGFTDVLFLDALT
GRNIEEGSAFNIFVLKGNVISTPTAHGTILPGITRKSIIEIASTLGYQVE
ERDVPIEEVFDAEEVFCTGTAMVLKSVVSITYQGKRIEYKMGEEPVAQKL
HATLTGIQTGLIEDKMGWTVEVD*
back to top