Tc02v2_t002480.1

Overview
NameTc02v2_t002480.1
Unique NameTc02v2_t002480.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1152
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
Productbranched-chain-amino-acid aminotransferase 6
NoteBranched-chain-amino-acid aminotransferase 2, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18607289
GenbankXM_007041365.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g002480Tc02v2_g002480Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p002480.1Tc02v2_p002480.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto83955auto83955Theobroma cacaoexon
exon-auto83956auto83956Theobroma cacaoexon
exon-auto83957auto83957Theobroma cacaoexon
exon-auto83958auto83958Theobroma cacaoexon
exon-auto83959auto83959Theobroma cacaoexon
exon-auto83960auto83960Theobroma cacaoexon
exon-auto83961auto83961Theobroma cacaoexon
exon-auto83962auto83962Theobroma cacaoexon
exon-auto83963auto83963Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto83964auto83964Theobroma cacaoCDS
CDS-auto83965auto83965Theobroma cacaoCDS
CDS-auto83966auto83966Theobroma cacaoCDS
CDS-auto83967auto83967Theobroma cacaoCDS
CDS-auto83968auto83968Theobroma cacaoCDS
CDS-auto83969auto83969Theobroma cacaoCDS
CDS-auto83970auto83970Theobroma cacaoCDS
CDS-auto83971auto83971Theobroma cacaoCDS
CDS-auto83972auto83972Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t002480.1 ID=Tc02v2_t002480.1|Name=Tc02v2_t002480.1|organism=Theobroma cacao|type=mRNA|length=1152bp
ATGCTACTTCTGATTTCGTACACTGCATCAGAGCAACCTGTTGGCTTCCT
AACGTACTTATCCTTTCTCTTGATTGCAGCTAAGATTATGGCTCCAGCAC
CAGTCTCATTCACATCTGTTACCAGAGATGGTGAAGAAACATACGCTGAC
ATCGATTGGGACCAACTTGGTTTTGCTCTAACTCCGGCAGATTACATGTA
TGTAATGAAATGCTCTAACAAAGAGAACTTTCCACAAGGACAGCTTGTTT
GCTATGGTAATATTGAGATAAGCCCATTCTCTGCAGTTCTGAATTATGGA
CAGGGATTGATTGAAGGTCTAAAGGCATACAGGACAGAAAATGGTGGAGT
TTTGCTCTTTCGGCCAGATGAGAACGCTAAGCGCATGCAAATGGGTGCAC
AAAGAGTGTGCTTGCCATCCCCATCTGTTGAGCAATTTGTTGAAGCCATA
AAGCAAACTGTCCTTGCCAATAAGCGTTGGGTGCCTCCGCATGGAAAAGG
GTCATTGTATCTTAGGCCTCTGCTGATGGGAAGTGGACCTGTTTTGGGAC
TTGTTCCTGCTCCTGAATGCACTTTTATGATATCTGGCACTCCCATTGGG
AACCACTTCTTGACCAATCACGGCGCTGCAAACTTGTATATTGAGGATAA
GCTTCCCCGTGCTTCTCCTGGTGGAACTGGAAGCATCAAAAGTATCACCA
ATTACTCACCTGTTTTCGAAGCAGTATCTCAAGCCAAAGCCAAAGGATTC
TCTGATGTCCTGTTTTTGGATGCAGCAACTGGAAAATGCATTGAGGAAGT
TTCTTCATCTAACGTCTTTATTGTCAAGGGCAATGTTATTTCAACTCCTC
CAATAAATGGAACTGTTCTGCCTGGAATAACACGAAAGAGCATCATGGAA
CTGGCTCTTGATATGGGATATCAGGTTGAGGAGGGCAATATCCCAGTGGA
GGATCTGATGAGTGCTGATGAAGTGTTCTGCACAGGAACGGTTGTGATTG
TTACTCCTGTTGGTAGCATAACCTACCAAGATACAAGGGCTGAATACAAG
ACAGGAGAAGGAACAGTATGTAATAAACTGCGGGCAACGCTTAGCGGGAT
TCAAATGGGTCTTATCCAAGACAAGAAGGGATGGACCGTTGCACTTGATT
GA
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protein sequence of Tc02v2_p002480.1

>Tc02v2_p002480.1 ID=Tc02v2_p002480.1|Name=Tc02v2_p002480.1|organism=Theobroma cacao|type=polypeptide|length=384bp
MLLLISYTASEQPVGFLTYLSFLLIAAKIMAPAPVSFTSVTRDGEETYAD
IDWDQLGFALTPADYMYVMKCSNKENFPQGQLVCYGNIEISPFSAVLNYG
QGLIEGLKAYRTENGGVLLFRPDENAKRMQMGAQRVCLPSPSVEQFVEAI
KQTVLANKRWVPPHGKGSLYLRPLLMGSGPVLGLVPAPECTFMISGTPIG
NHFLTNHGAANLYIEDKLPRASPGGTGSIKSITNYSPVFEAVSQAKAKGF
SDVLFLDAATGKCIEEVSSSNVFIVKGNVISTPPINGTVLPGITRKSIME
LALDMGYQVEEGNIPVEDLMSADEVFCTGTVVIVTPVGSITYQDTRAEYK
TGEGTVCNKLRATLSGIQMGLIQDKKGWTVALD*
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