Tc02v2_t002320.1

Overview
NameTc02v2_t002320.1
Unique NameTc02v2_t002320.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2085
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
Productaspartate--tRNA ligase, chloroplastic/mitochondrial
NoteAspartate--tRNA ligase, chloroplastic/mitochondrial
Cross References
External references for this mRNA
DatabaseAccession
GeneID18607273
GenbankXM_007041348.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g002320Tc02v2_g002320Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p002320.1Tc02v2_p002320.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto83815auto83815Theobroma cacaoexon
exon-auto83816auto83816Theobroma cacaoexon
exon-auto83817auto83817Theobroma cacaoexon
exon-auto83818auto83818Theobroma cacaoexon
exon-auto83819auto83819Theobroma cacaoexon
exon-auto83820auto83820Theobroma cacaoexon
exon-auto83821auto83821Theobroma cacaoexon
exon-auto83822auto83822Theobroma cacaoexon
exon-auto83823auto83823Theobroma cacaoexon
exon-auto83824auto83824Theobroma cacaoexon
exon-auto83825auto83825Theobroma cacaoexon
exon-auto83826auto83826Theobroma cacaoexon
exon-auto83827auto83827Theobroma cacaoexon
exon-auto83828auto83828Theobroma cacaoexon
exon-auto83829auto83829Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto83830auto83830Theobroma cacaoCDS
CDS-auto83831auto83831Theobroma cacaoCDS
CDS-auto83832auto83832Theobroma cacaoCDS
CDS-auto83833auto83833Theobroma cacaoCDS
CDS-auto83834auto83834Theobroma cacaoCDS
CDS-auto83835auto83835Theobroma cacaoCDS
CDS-auto83836auto83836Theobroma cacaoCDS
CDS-auto83837auto83837Theobroma cacaoCDS
CDS-auto83838auto83838Theobroma cacaoCDS
CDS-auto83839auto83839Theobroma cacaoCDS
CDS-auto83840auto83840Theobroma cacaoCDS
CDS-auto83841auto83841Theobroma cacaoCDS
CDS-auto83842auto83842Theobroma cacaoCDS
CDS-auto83843auto83843Theobroma cacaoCDS
CDS-auto83844auto83844Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t002320.1 ID=Tc02v2_t002320.1|Name=Tc02v2_t002320.1|organism=Theobroma cacao|type=mRNA|length=2085bp
ATGACCCAATCCGTTAAACCCTTCTTTCTCTGTTCCCAAAATGGCCAAAG
CCCCCGTTCTGTCCTAACCCCCGAAAACCTCAGAAAAATGTCTATGCTTC
TCAAATCCTTCATTTTCCTCTCCTTTCGAGCCAGACCCCTCGCTGTTTTC
CCTTCCGTTTTACTGCCCAAATCACCTCCGAGGAACAGTCGAACCCTTTC
CTCCGTTTCCGATTCCAGTCACCCATCTCCTCCTTCTCCTTCCCTGTCCC
CTGAAACTCCCAAACCCATCGCACCACTAGCCCCTTCCAAGGACTCTCTC
CAGTGGGTATCTCGCACCGCTTTTTGTGGTGATTTGTCAAGTGAAGATGT
GGGTTCCCGGGTCCGGCTTTGCGGGTGGGTCGCTCTCCACCGGGTCCATG
GTGGGCTCACCTTTCTTAATCTCAGAGACCACACTGGCATTGTCCAGATT
ACGTCGCTCCCAGATGAGTTTCCTGATGCCCATGCAGCTATCAAGGATTT
GAGGCTTGAGTATGTGGTTGCTGTTGATGGTCTTGTCCGGTCTCGGCCCA
GCGAGGCTGTTAATAAGAAAATGAAAACCGGCACAATAGAGGTCGCTGCG
GAGCATGTGCAGATATTAAATGCTGTAAGATCAAAGTTACCATTCTTGGT
TACTAGTGCGGATGATGCAAAGGATTTTGTCAAGGAGGAAATCCGTTTAA
GATATCGATGCCTTGATTTACGCCGGCACCAAATGAATTTCAACATCATG
CTGCGTCATAGAGTGGTGAAACTCATTCGACGATATCTGGAGGATGTACA
TAATTTTGTGGAGATTGAAACTCCAATGCTCTCTAGATCTACTCCAGAAG
GTGCTCGGGATTATTTGGTGCCCTCTAGGATCCAGCCAGGAACATTCTAT
GCTTTGCCTCAAAGTCCGCAGCTTTTCAAGCAAATGTTAATGGTTTCTGG
TTTTGATAAATATTATCAAATAGCAAGATGTTTTAGAGATGAAGATCTGA
GAGCAGATAGACAGCCTGAGTTCACGCAGCTTGATATGGAAATGGCTTTC
ACTCCATTGGAGGACATGCTGAGGCTTAATGAAGACTTAATCCGAAAGGT
TTTTCTAGAGATTAAAGGCGTCCAGCTACCCAATCCTTTCCCAAGGCTTA
CATATGCTGAGGCAATGGATCGATATGGTTCAGATAGACCAGACATCAGA
TTTGATCTTGAGTTGAAAAATGTATCTGATCTCTTCTTAGACTCTCCCTT
CAGGCTCTTTGCAGATACATTGAAAAATGGTGGAATTATCAAAACACTAT
GTGTGCCATCAGGTGCTAAAAAATTTTCAAATACAGCTCTTAAGAAAGGT
GATGTTTATAATGAAGCAATCAAGTCTGGAGCAAAGGGTCTACCCTTCGT
AAAGGTCTTGGATGATGGAGAGATTGAGGGAATTCCCGCATTAGTAACTA
GTTTAGGTCCAACAAACAGAGAGCAATTTTTGAGACAATGCTCTGCAGGA
CCAGGTGATCTGATCTTGTTTGCAGTGGGCCATCATACACCAGTTAACAG
AACCTTAGATCGACTTAGGGTATTCATAGCCCATGAACTTGGTTTGGTTA
ACTATTCCAGGCATTCAATTTTGTGGGTGACTGATTTCCCAATGTTTGAG
TGGAATGAATTGGAACAGAGACTTGAGGCCTTGCATCACCCATTTACTGC
ACCACACCCTGAAGATATGGAAGATCTTTCTTCTGCACGTGCCCTTGCTT
ATGACATGGTTTACAATGGAGTTGAGATTGGTGGAGGAAGTTTAAGGATT
TTTAAACGTGAGGTCCAACAGAAAGTATTGGAAACTGTTGGCATCTCTCC
TGAACAGGCTGAAGCAAAGTTTGGCTATCTTCTGGAAGCTTTAGACATGG
GTGCTCCTCCACACGGGGGAATTGCTTATGGTTTGGATAGATTGGTTATG
CTGTTAGCAGATGCAAATTCTATCAGAGATGTCATTGCTTTCCCAAAGAC
AACTACTGCTCAATGTGCCCTCACTCGAGCACCATCCGAAGTGGATATCC
AACAGTTGAAGGATCTCTCACTGGTGACCCAATAG
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protein sequence of Tc02v2_p002320.1

>Tc02v2_p002320.1 ID=Tc02v2_p002320.1|Name=Tc02v2_p002320.1|organism=Theobroma cacao|type=polypeptide|length=695bp
MTQSVKPFFLCSQNGQSPRSVLTPENLRKMSMLLKSFIFLSFRARPLAVF
PSVLLPKSPPRNSRTLSSVSDSSHPSPPSPSLSPETPKPIAPLAPSKDSL
QWVSRTAFCGDLSSEDVGSRVRLCGWVALHRVHGGLTFLNLRDHTGIVQI
TSLPDEFPDAHAAIKDLRLEYVVAVDGLVRSRPSEAVNKKMKTGTIEVAA
EHVQILNAVRSKLPFLVTSADDAKDFVKEEIRLRYRCLDLRRHQMNFNIM
LRHRVVKLIRRYLEDVHNFVEIETPMLSRSTPEGARDYLVPSRIQPGTFY
ALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEMAF
TPLEDMLRLNEDLIRKVFLEIKGVQLPNPFPRLTYAEAMDRYGSDRPDIR
FDLELKNVSDLFLDSPFRLFADTLKNGGIIKTLCVPSGAKKFSNTALKKG
DVYNEAIKSGAKGLPFVKVLDDGEIEGIPALVTSLGPTNREQFLRQCSAG
PGDLILFAVGHHTPVNRTLDRLRVFIAHELGLVNYSRHSILWVTDFPMFE
WNELEQRLEALHHPFTAPHPEDMEDLSSARALAYDMVYNGVEIGGGSLRI
FKREVQQKVLETVGISPEQAEAKFGYLLEALDMGAPPHGGIAYGLDRLVM
LLADANSIRDVIAFPKTTTAQCALTRAPSEVDIQQLKDLSLVTQ*
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