Tc02v2_t001620.1

Overview
NameTc02v2_t001620.1
Unique NameTc02v2_t001620.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2532
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Productputative DNA (cytosine-5)-methyltransferase CMT1
NotePutative DNA (cytosine-5)-methyltransferase CMT1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18607154
GenbankXM_007041177.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g001620Tc02v2_g001620Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p001620.1Tc02v2_p001620.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto82367auto82367Theobroma cacaoexon
exon-auto82368auto82368Theobroma cacaoexon
exon-auto82369auto82369Theobroma cacaoexon
exon-auto82370auto82370Theobroma cacaoexon
exon-auto82371auto82371Theobroma cacaoexon
exon-auto82372auto82372Theobroma cacaoexon
exon-auto82373auto82373Theobroma cacaoexon
exon-auto82374auto82374Theobroma cacaoexon
exon-auto82375auto82375Theobroma cacaoexon
exon-auto82376auto82376Theobroma cacaoexon
exon-auto82377auto82377Theobroma cacaoexon
exon-auto82378auto82378Theobroma cacaoexon
exon-auto82379auto82379Theobroma cacaoexon
exon-auto82380auto82380Theobroma cacaoexon
exon-auto82381auto82381Theobroma cacaoexon
exon-auto82382auto82382Theobroma cacaoexon
exon-auto82383auto82383Theobroma cacaoexon
exon-auto82384auto82384Theobroma cacaoexon
exon-auto82385auto82385Theobroma cacaoexon
exon-auto82386auto82386Theobroma cacaoexon
exon-auto82387auto82387Theobroma cacaoexon
exon-auto82388auto82388Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto82389auto82389Theobroma cacaoCDS
CDS-auto82390auto82390Theobroma cacaoCDS
CDS-auto82391auto82391Theobroma cacaoCDS
CDS-auto82392auto82392Theobroma cacaoCDS
CDS-auto82393auto82393Theobroma cacaoCDS
CDS-auto82394auto82394Theobroma cacaoCDS
CDS-auto82395auto82395Theobroma cacaoCDS
CDS-auto82396auto82396Theobroma cacaoCDS
CDS-auto82397auto82397Theobroma cacaoCDS
CDS-auto82398auto82398Theobroma cacaoCDS
CDS-auto82399auto82399Theobroma cacaoCDS
CDS-auto82400auto82400Theobroma cacaoCDS
CDS-auto82401auto82401Theobroma cacaoCDS
CDS-auto82402auto82402Theobroma cacaoCDS
CDS-auto82403auto82403Theobroma cacaoCDS
CDS-auto82404auto82404Theobroma cacaoCDS
CDS-auto82405auto82405Theobroma cacaoCDS
CDS-auto82406auto82406Theobroma cacaoCDS
CDS-auto82407auto82407Theobroma cacaoCDS
CDS-auto82408auto82408Theobroma cacaoCDS
CDS-auto82409auto82409Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t001620.1 ID=Tc02v2_t001620.1|Name=Tc02v2_t001620.1|organism=Theobroma cacao|type=mRNA|length=2532bp
ATGGGGAGGGGTTCAAAGCGAAAGGTCGAGAAGCAGCAGCTCGATGAATC
GATCGATTCGGAATCCGAAACCCAAAACGAGGATTCGACTACCTTGTTAC
ATCCTCGATCGAAGAAAGGCCGAAAGGTTGCACGTGACGCCGAGCTCTGT
CTCGTTGGCCCACCCATTGCGGCAGATGAAGCCCGACGACGATGGCCGTT
GAGATATCAGTCAAAGAATAAGGTTAAGAAGCAGGCTGTAACTGAGACTT
CAAATGATGAGGAGGACGACGTACTGCAAGCAAGAAATCATTATGATAAG
TCTAAGGTTGACGGTTGTCTCTACAAATTAGGTGATAATGCGTATGTTCA
GGCAGAAGATGGCAATCTTAATTACATTGCCAGGATTGTTGAATTATTTG
AAACAATTGATAAAAAACCATATTTTAAAGCTCAATGGTTTTATAGGGCT
GATGATACAGTTATTAACAAGGATAATGCACATTTGATTGATAATAGACG
AGTGTTTCTCTCTGACATCCATGATGACAATCCGTTGAATTGTATCCTCT
CCAAAGTAGAAATCGCTCAAGTTGCACCAAATATTGACCTAGTTGCAAAA
GAGAGAACAATCCCACTGTCTGAACTATATTACGATATGAAGTACTCCTT
ACCGTACTTGACATTCAAAAATATAGTCACTGAAACTCCAAAAAGAGATA
GTGATACATCATCAGTAGTTTCTAGTGAGTGTGGTTCGAGTGAGTGCGGT
TCAAATAATGCTACTTCAAAAGTTGAGAGGTCTTTGCTAGATCTATATTC
TGGTTGTGGGGCTATGTCCACTGGCCTTTGCATGGGTGCCTCCTTATCTG
GTGTAAAGCTAGTCACAAGGTGGGCTGTTGACATAAATTCTTATGCTTGT
AAAAGTTTGCAATGGAATCATCCTGAAACTAAGGTGAGAAATGAGGCTGC
AGAGGATTTTTTGTGTTTACTAAAGGAGTGGGAAAAGTTATGCCAGAAAT
TCTCCTTGCTTGGAGCAGACAAAACACTTGAAAATGGTTCAAGTGAAACT
AGTGATGAGGAGGATGATGATGGCCAGGGATGTGAAGAGGAAGAAGAAAA
AGAAAGAGAAGATGGAGACTCGGAGGATTCCTCTGAAGAATTTGAAGTTG
AGAGATTATTGGATATTTGTTTTGGTGATCCTAACCAGGTGAACAAGCCG
GGATTATATTTTAAGGTGCGTTGGAAGGGTTATGATGCAAGTTATGATAC
TTGGGAGCCTATGAAGGGCTTGAGTAAGTGTCAAGAAAAATTGAAGGACT
TTGTAAGGAAGGGGTACAAGTCAAACATATTGCCTTTGCCTGGAAATGTT
TACTTTATATGTGGAGGGCCCCCGTGTCAAGGCATAAGTGGGTTTAATCG
CTTTAGAAATGGAAATGCGCCGTTGGATGATATAAAAAATAAGCAATTAG
TGGTATATATGGATATTATAGAGCATCTGAAACCGAGATATGTTTTAATG
GAAAATGTTGTAGACATTTTGAAGTTTGCTAAGGGTTTTTTGGGACGTTA
TGCCATCGGCCGTCTAGTTTCCATGAATTATCAAGCTAGAATGGGGATGA
TGGCTGCTGGATCTTACGGGGTTGCACAATGTAGGATGAGGGTTTTTCTG
TGGGGTGCACATCCTTCAGAGAAATTGCCTCAATATCCATTGCCAACTCA
TGAGGTTGCATCTAGAGGACATGTTCCAAATGAGTTTGAGGAAATCAATG
TTGCGTATAGTAAAAGTGACACCTGTCAGTTGGAAAGGGCTCTTACTCTT
GGTGATGCGATATCTGATCTTCCACAAGTTAACAATGATGAGAGTGAGGA
TCAGAGGAAGTATGGCAAAGTTGCTCGAACAGAGTTCCAAAAATATATTA
GATTGCAAAGAAAGGATGTAACAAATTTGACAGTTGATACTCGACATGCA
TCATCCTTGGGAATGCTATATGATCACCGGCCGTTGCAATTGAATGCTGA
TGATTATGAACGTGTTTGCCGCGTTCCAAAGAGGAAGGGTGCGAATTTCA
GAGACCTACCAGGTGTAATAGTTGGTGAAAATAACAGGGTAGAGTGGGAC
ACAACAATGGAAAGAGTGAAGCTCAAATCTGGGAAACCATTGGTGCCTGA
TTATGCCATGAAGTTTGTCAAAGGGAGGTCAACCAAGCCATTTGGTCGTT
TGTGGATGGATGAAATTGTTAAGACAGTAGTAACAAGGGCTAAACCTCAT
AACCAGAGCATCCTTCATCCTTCGCAAGACAGGGTACTCACAATCCGTGA
AAATGCTAGACTACAGGGGTTCCCGGACTGCTATAAGCTTTTTGGGTCTA
TCAAGGAGAGATATATACAGGTTGGAAATGCTGTTGCTGTTCCAGTTGCT
ATTGCATTGGGATACGCATTTGGTTTAGCATGCCGAGGAGTCTCCGATGA
TGAGCCCTTGTTGATCCTTCCTTTCAAGTTCCCAAAGTGTCTTGCACGGT
CTTCACAAATAGAAGTAGATGATTCTGATTGA
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protein sequence of Tc02v2_p001620.1

>Tc02v2_p001620.1 ID=Tc02v2_p001620.1|Name=Tc02v2_p001620.1|organism=Theobroma cacao|type=polypeptide|length=844bp
MGRGSKRKVEKQQLDESIDSESETQNEDSTTLLHPRSKKGRKVARDAELC
LVGPPIAADEARRRWPLRYQSKNKVKKQAVTETSNDEEDDVLQARNHYDK
SKVDGCLYKLGDNAYVQAEDGNLNYIARIVELFETIDKKPYFKAQWFYRA
DDTVINKDNAHLIDNRRVFLSDIHDDNPLNCILSKVEIAQVAPNIDLVAK
ERTIPLSELYYDMKYSLPYLTFKNIVTETPKRDSDTSSVVSSECGSSECG
SNNATSKVERSLLDLYSGCGAMSTGLCMGASLSGVKLVTRWAVDINSYAC
KSLQWNHPETKVRNEAAEDFLCLLKEWEKLCQKFSLLGADKTLENGSSET
SDEEDDDGQGCEEEEEKEREDGDSEDSSEEFEVERLLDICFGDPNQVNKP
GLYFKVRWKGYDASYDTWEPMKGLSKCQEKLKDFVRKGYKSNILPLPGNV
YFICGGPPCQGISGFNRFRNGNAPLDDIKNKQLVVYMDIIEHLKPRYVLM
ENVVDILKFAKGFLGRYAIGRLVSMNYQARMGMMAAGSYGVAQCRMRVFL
WGAHPSEKLPQYPLPTHEVASRGHVPNEFEEINVAYSKSDTCQLERALTL
GDAISDLPQVNNDESEDQRKYGKVARTEFQKYIRLQRKDVTNLTVDTRHA
SSLGMLYDHRPLQLNADDYERVCRVPKRKGANFRDLPGVIVGENNRVEWD
TTMERVKLKSGKPLVPDYAMKFVKGRSTKPFGRLWMDEIVKTVVTRAKPH
NQSILHPSQDRVLTIRENARLQGFPDCYKLFGSIKERYIQVGNAVAVPVA
IALGYAFGLACRGVSDDEPLLILPFKFPKCLARSSQIEVDDSD*
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