Tc02v2_t000920.1

Overview
NameTc02v2_t000920.1
Unique NameTc02v2_t000920.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length390
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 24 ESTs, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productphotosystem I reaction center subunit psaK, chloroplastic
NotePhotosystem I reaction center subunit psaK, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18607074
GenbankXM_018114668.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g000920Tc02v2_g000920Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p000920.1Tc02v2_p000920.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto80170auto80170Theobroma cacaoexon
exon-auto80171auto80171Theobroma cacaoexon
exon-auto80172auto80172Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto80173auto80173Theobroma cacaoCDS
CDS-auto80174auto80174Theobroma cacaoCDS
CDS-auto80175auto80175Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t000920.1 ID=Tc02v2_t000920.1|Name=Tc02v2_t000920.1|organism=Theobroma cacao|type=mRNA|length=390bp
ATGGCAGCCACTGCAATGACCACTCTCCCTCAGTTCAGTGGGCTAAGACC
CAGAATTTCTGCAGCTCCAGTTAGGAGCCTGGCAGCGGTTCAGCCAATGA
GGCGCAAGGGGAAGGGAGCTTTGGGTGCTCGCTGTGGTTACATTGGTTCT
CCCACAAATTTGATAATGGTGACAACAACAAGCCTTATGCTCTTTGCTGG
GAGATTTGGGTTGGCTCCCTCAGCAAACAGGAAGGCCACTGCTGGGCTGA
AGCTCGAAGCAAGGGACTCCGGGTTGCAGACTGGTGACCCTGCTGGTTTT
ACTCTCGCAGACACCTTGGCTTGTGGCTCTGTTGGCCACATTATTGGTGT
TGGGATTGTTCTAGGCCTTAAGAACATTGGTGCTCTGTAA
back to top

protein sequence of Tc02v2_p000920.1

>Tc02v2_p000920.1 ID=Tc02v2_p000920.1|Name=Tc02v2_p000920.1|organism=Theobroma cacao|type=polypeptide|length=130bp
MAATAMTTLPQFSGLRPRISAAPVRSLAAVQPMRRKGKGALGARCGYIGS
PTNLIMVTTTSLMLFAGRFGLAPSANRKATAGLKLEARDSGLQTGDPAGF
TLADTLACGSVGHIIGVGIVLGLKNIGAL*
back to top