Tc02v2_t000310.1

Overview
NameTc02v2_t000310.1
Unique NameTc02v2_t000310.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2121
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
ProductDNA polymerase eta, transcript variant X3
NoteDNA polymerase eta
Cross References
External references for this mRNA
DatabaseAccession
GeneID18607006
GenbankXM_018115275.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g000310Tc02v2_g000310Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p000310.1Tc02v2_p000310.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto78763auto78763Theobroma cacaoexon
exon-auto78764auto78764Theobroma cacaoexon
exon-auto78765auto78765Theobroma cacaoexon
exon-auto78766auto78766Theobroma cacaoexon
exon-auto78767auto78767Theobroma cacaoexon
exon-auto78768auto78768Theobroma cacaoexon
exon-auto78769auto78769Theobroma cacaoexon
exon-auto78770auto78770Theobroma cacaoexon
exon-auto78771auto78771Theobroma cacaoexon
exon-auto78772auto78772Theobroma cacaoexon
exon-auto78773auto78773Theobroma cacaoexon
exon-auto78774auto78774Theobroma cacaoexon
exon-auto78775auto78775Theobroma cacaoexon
exon-auto78776auto78776Theobroma cacaoexon
exon-auto78777auto78777Theobroma cacaoexon
exon-auto78778auto78778Theobroma cacaoexon
exon-auto78779auto78779Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto78780auto78780Theobroma cacaoCDS
CDS-auto78781auto78781Theobroma cacaoCDS
CDS-auto78782auto78782Theobroma cacaoCDS
CDS-auto78783auto78783Theobroma cacaoCDS
CDS-auto78784auto78784Theobroma cacaoCDS
CDS-auto78785auto78785Theobroma cacaoCDS
CDS-auto78786auto78786Theobroma cacaoCDS
CDS-auto78787auto78787Theobroma cacaoCDS
CDS-auto78788auto78788Theobroma cacaoCDS
CDS-auto78789auto78789Theobroma cacaoCDS
CDS-auto78790auto78790Theobroma cacaoCDS
CDS-auto78791auto78791Theobroma cacaoCDS
CDS-auto78792auto78792Theobroma cacaoCDS
CDS-auto78793auto78793Theobroma cacaoCDS
CDS-auto78794auto78794Theobroma cacaoCDS
CDS-auto78795auto78795Theobroma cacaoCDS
CDS-auto78796auto78796Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t000310.1 ID=Tc02v2_t000310.1|Name=Tc02v2_t000310.1|organism=Theobroma cacao|type=mRNA|length=2121bp
ATGCCAGTGGCAAAACCAGAATCGTGTGATTCGAGGGTGATTGCTCATAT
CGACATGGACTGCTTCTATGTTCAAGTGGAGCAAAGAAAGCAACCGCAAT
TACGGGGTTTGCCTACTGCAGTTGTACAGTACAATGAATGGAAAGGAGGC
GCTTTGATTGCTGTCAGCTATGAGGCACGTAAATTCGGGGTGAAGCGCTC
AATGCGTGGTGAGGAAGCAAAGGAGGTTTGCCCACAAATTCATCTGGTCC
AAGTTCCTGTAGCCCGTGGTAAAGCTGATCTGAATGGTTATCGGAATGCA
GGCTCCGAGGTGGTATCCATCCTTGCAAGGAGAGGTAGATGTGAAAGGGC
TTCCATTGATGAAGTTTATCTTGATCTTACTGATGCAGCAGAAACAATGC
TAGCAGAAGCTCCTCCACAGCATTTGGAGGCAATAGATGAGGAAGCTCTT
AAGTCACATATTCTAGGGCTCAATAATGAGGATGGGAGTGATGTGAAAGA
AAATGTTAGGAATTGGATACATAGGTGCAATGCTGATCACCGTGATAAGT
TACTAGCTTGTGGGATCCTCATTGTTGCAGAACTTAGGATGCAGGTTTTA
AAGGAGACAGAATTCACTTGTTCTGCAGGCATTGCTCATAATAAGATGCT
GGCCAAACTTGCAAGTGGTATGAATAAACCTGCACAACAAACTGTTGTGC
CTTTCTCATCTGTACAAGGATTGCTCAATTCCTTGCCAATAAGGAAAATG
AAACAGCTTGGAGGCAAGCTGGGAATGTCCTTACAAATTGACATGGGTGT
GAACACTGTTGGAGATCTATTGCAATTTTCAGAGGAGAAGCTTCAAGAAC
GTTATGGCTTAAATACTGGTACTTGGCTATGGAATATTGCAAGAGGAATC
AATGGAGAAGCAGTTGAGGGACGCCTTCTCCCCAAGAGCCATGGTTCTGG
AAAGACATTTCCTGGCCCTCGTGCACTAAAGACAGTTTCTGCAGTGCAAC
ACTGGCTTAATCAACTTTGCGAAGAACTCAGCGAACGGCTTTGCTCTGAC
CTAGACCAAAACAAGAGGATAGCACACACTTTAACTCTGCATGTTAGAGC
ATACAAGTCCAGTGACTCAGATTCACAGAAAAAGTTCCCCTCAAAATCTT
GTCCACTAAGGTATGGGACTGCCAAGATCCAGGAAGATGCCTTCAACCTA
TTTCAAGCTGGATTGCGCGAATACATAGGATTGTATGGTGGTAAGTCTGA
AGGAAGTCACTACAGTGGATGGGGGATAACATCTCTTTCTGTTTCAGCCA
GTAAAATTGTCCCCATACCATCTGGAACATGTTCAATTGCGAAATATTTT
CATTGGCAAACTTCATCCCACTTTTCTTCAATACAATCACCGGAGAACCT
CAGAATGGATGCAACGCATTTGTCACCCCCAGGTAATGAAAGCTACTCAG
AGGTGAATTTACCTGAACCAAAAATTGATTTTCCAGGGGAAGAAAGCTGG
ATTGAGGATACTATCCCTGGTTTGGGTCTACAAGAACAGAAAATAAATGT
CTGGAAAGATGAGGATCTAGCTTGCTTTCCATCAAAGAAGAAAGAAGATG
GCTTGACCGAGGATACTTCACCATTGTTACTCTCAGGAACTCAGGGGTGC
TTGGAACAGAACCAGAATAAACAGCAAAGAGAGTTCTCTAAGGATGAAAG
TCGGTTTAAGTCAGAATACAGGGAGCAAAAAGGAACAAGATTGAATAACA
AGGGAACATCTTCAATTTTGAAATTTTTTAAGAGCTGCAATCCCTCTGGC
GCTTCGTTGTCCCAAGAGCACGATAAAACTGTCCAAGGCACCGATGCTCA
ATTAACCAACGGTGCAGGTTTTCAGTCCAGAGGTCATAGCCTTGCAGAAC
TTAATGAAGTTGAAGTAGCAGAGGAGAATGAGAGGAGCAGTTGCAGTTAC
ATTAGAGATCAGGATGAACGGAGAAGGGAAGCATGGAGTTACAACATCGA
TGAAATTGACCCATCTGTGATTGATGAATTGCCAACAGAGATCCAAGATG
AAATTCAAGCCTGGCTGCAGCCTCGAAAGCGGCCTAATAATATAGTCAAG
CGAGGACCTAAAGCTTGTTGA
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protein sequence of Tc02v2_p000310.1

>Tc02v2_p000310.1 ID=Tc02v2_p000310.1|Name=Tc02v2_p000310.1|organism=Theobroma cacao|type=polypeptide|length=707bp
MPVAKPESCDSRVIAHIDMDCFYVQVEQRKQPQLRGLPTAVVQYNEWKGG
ALIAVSYEARKFGVKRSMRGEEAKEVCPQIHLVQVPVARGKADLNGYRNA
GSEVVSILARRGRCERASIDEVYLDLTDAAETMLAEAPPQHLEAIDEEAL
KSHILGLNNEDGSDVKENVRNWIHRCNADHRDKLLACGILIVAELRMQVL
KETEFTCSAGIAHNKMLAKLASGMNKPAQQTVVPFSSVQGLLNSLPIRKM
KQLGGKLGMSLQIDMGVNTVGDLLQFSEEKLQERYGLNTGTWLWNIARGI
NGEAVEGRLLPKSHGSGKTFPGPRALKTVSAVQHWLNQLCEELSERLCSD
LDQNKRIAHTLTLHVRAYKSSDSDSQKKFPSKSCPLRYGTAKIQEDAFNL
FQAGLREYIGLYGGKSEGSHYSGWGITSLSVSASKIVPIPSGTCSIAKYF
HWQTSSHFSSIQSPENLRMDATHLSPPGNESYSEVNLPEPKIDFPGEESW
IEDTIPGLGLQEQKINVWKDEDLACFPSKKKEDGLTEDTSPLLLSGTQGC
LEQNQNKQQREFSKDESRFKSEYREQKGTRLNNKGTSSILKFFKSCNPSG
ASLSQEHDKTVQGTDAQLTNGAGFQSRGHSLAELNEVEVAEENERSSCSY
IRDQDERRREAWSYNIDEIDPSVIDELPTEIQDEIQAWLQPRKRPNNIVK
RGPKAC*
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