|
|
Properties
| Property Name | Value |
|---|
| Model evidence | Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns |
| Product | putative disease resistance protein RGA3, transcript variant X2 |
| Note | Putative disease resistance protein RGA3 |
Cross References
External references for this mRNA
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Tc01v2_t034040.2 ID=Tc01v2_t034040.2|Name=Tc01v2_t034040.2|organism=Theobroma cacao|type=mRNA|length=3348bp
ATGGCAGAGGCAGTCCTTTCCGCTCTCTTGCAGGTGATATTTGAGAAATC
AACTTCTGAGACATTCGAAACGTATGCACTGTTGCGGGGCACTGAGAAGG
AGATGAGGAAGCTTCAAGGTGTCTTATCAACAATTCAAGCTGTACTGGAA
GATGCAGAAGATCGACAAGCAATGGATAAGGCAGTTAAAAATTGGTTGAT
AAAGCTTAAGGATGTAGCCTATGATGCCGATGACTTGTTGGAAGAATACA
TGACAGAAGCATCACGGCGGCGGTTGGAGTCTCATGATTACAAGAAACTC
TCGCGTTTCATATTGAATGAGGTACGGTACTTCTTCTCACAATCAAATCC
GATTCTGTTTCGTTATCAAATGAGAAACAAGTTGGAGAATATAGCGGAGA
GATTAGATGCTGTTGCAGACGAGAGGTTCAAGTTCCATCTGGGAGATAGA
TTGGCTGATTCCAGGAGTCAGTTCCCTCAAAGACTACAATCAGATTCTTA
CCTACTAGAGTCTGAAGTTCTGGGCAGAGAAGCAGACCAAGAAAAGATCG
TGACCCTTCTGCTGAGCTCAGCCGATCAAAGAGACGTGTCGGTGCTTCCT
GTGGTTGGAATGGGTGGGTTAGGTAAGACAACGCTTGCCAAGTTGGTGTA
CAATGACGAGAGGGTGCAGGAGCATTTTGAATGTAGAATTTGGGTTTGTG
TGTCTGAGGACTTTGATGTAAAGCGACTAATGAAAGCAATTATTGAATCT
ATGACTGGGAACCGATGTGATCTTCAGGAAACGGAATCAATTCACCGCCG
CGTTCAAGAACTGATACGGGGACTGAGGTTTTTACTAGTTTTAGATGATG
TATGGAATGATGATCAAGAAAAATGGGACAGATTGAAAAATTCAGTCAGG
CATGGTTCTGTAGGTAGCAAGATCTTAGTAACAACCCGTAGTGAGAAAGT
TGCATTGGTTACAGGCACCTTTGCTCCCTACCATTTGGAGGGACTATCAG
ATGAAGATTGCTGGTTACTATTTGAGCATCGAGCATTCAAATCTGGAAGA
CCAGAAGAGAGTTCAAGTTTCATAGCAATTGGAAAAGAAATTGCAAAGAA
GTGCCGGGGTGTACCTCTAGCAGCAAAGTCTTTAGGAAGTTTGATGTATT
TGAGAAGGAAAAGAAGTGAGTGGTTATTTGTTAAAGACAGCGAGATATGG
AGGCTTGTGGAGGAAGAAAATGGAATTTTACCCGTGTTAAGACTAAGCTA
TGATAGTCTGCCATCACATCTGAAACAATGTTTTGCCTATTGTTCATTGT
TTCCTAAGAACTGCAGGATAAATAAGGATAAACTCATCCTACTATGGATA
GCAGAAGGATTTATCCAAGTACCTCCAGGAAAGTCGCCGGAAGAAGTTGG
AAATGAATACTTTAATGAATTACTATGGAGCTCTTTCTTCCAAAATGTAA
CCACAGACCATGATAAGAACATCATGGACTGTGAAATGCATCATCTTCTC
CATGATCTTGCGAAAGCTGTTGCTGGTAGCAGTTGCGTGACAGTAGAAGT
CAGCAAGCGGTTGAGTGTTCCAACAGGCACACGCTACTTATCAGTGTTTT
GTGCGGATAATAAGATTCCAAGGGGCTCAAGGAATGCCTGCAAGTTGAGA
TCCTTCCTTCTACTGTCTGGACACTGGAAGACTGCAGAAGTATCTCGCAA
ATTGATCTTGAGTCTCAAATCCTTGCGCTCCTTAGATATAAGCAATACTG
GCATAAAGAAGATATCGAAGTCCATCGGTTTGATGATTCACTTAAGGTAT
CTTGACCTCTCTAGCACTCTTATCAAAAGGTTACCAAATACAGTCTGTAG
CCTTTTCAATTTACAATCTTTAATACTCAAGCACTGCACTCGTCTGGAGA
AGCTGCCCAAAGATATGAGAAAGTTAATCAATCTCAGGCATTTGAATTTA
TCTGATTGTAGATTATTAAATAAGTTGCCAAATGGAATCGGTGATCTTAG
GTCACTTCAAACATTGCCTGTATTCATAGTTGGCAAGGAAGCTTCATGTA
GTATAGCAGAGTTGCAGAACCTAGACTTACATGGAGAACTTGAAATTAGG
AACCTCGAGAATGTGTCTAATAGTAGATGTTCCAAGAGTGCGAAGAGGGC
CAACTTGAAGGAGAAGTGGAACCTGCAGTCATTGAAATTATGGTGGGAGC
ATGTTGATGAGGTGCATGTTAAAGAAAACGTTGAGCATGTTATTGAAGGC
CTTCAGCCAAGTTTTGAACTAAAAAAGTTGGAAATCAAGAATTATGTGGG
CTCAAAATTTCCTGGTTGGTTGATGAATCCATGTCTTACAAATCTTGTAG
AGCTCTCCTTAATTAAATGCCAAAGGTGTGTTCAGCTTCCTCTACTACAG
AAGCTACCAGCTCTTGAGGTTCTCACAATCAATGAGATGGAGGCCACAAT
GTACTTCTGCGACGATTTACAAGGAAATGCAGGTGGTAATGGCTTTGTAT
CACTGAAAACACTGTCGATCGAAAACATGAGCAATTTATTGGGATGGACA
ACTAATGGAGGACAACTTATACTTCCAAGCCTGAAGCAATTGGTGATTGA
TGGGTGCCCAAATTTGGGCTCGTTACCAGAGCTTCCTTCTGTTGCATCAA
TGAAACTCGATGATTGCAGCATGGACTTACTAAGGATGGTAACAAGGATC
ACCACTCTTTCCGATTTGATAATCAGTGGATTTTCAGAGCTTGTACAGTT
GCCTCAAGGGTTGCTAAAAAGCAACCCATCCTTGTTGTCTCTTGAAATCA
GGGACTGTCTGGAGCTTAGATCTTTCTCAGGTGAGCTTCAAACTCTTGGT
CCCCTTCAATGTTTAACCATTAGCAATTGCCCCGAGTTGGAATCATTTTC
AGAGTTGAGCGGCCTCAGTTCACTCGAGTCTTTGTGGATAGACAGGTGTG
ATAGTCTAGTTTCAATGCCAGGAGGAATGACAAGATTAAACTCTCTTCGA
CATGTTTCGTTCTCTGATTGTGAAAATTTAGCGGCCTTGCCAGAGGCTAT
CAAATACCTTACATGTCTCCAAACATTGAACATATTCAGCTGTCCAGCCC
TGGAAACTCTGCCTGAGTGGCTGGGAAACCTTGTTGCACTGAGAGAAATG
GAGCTTTGCTATTGTGAGAATCTGCTACGCCTCCCGCAATCAATGCAGCG
CCTGACTGCTCTCCAGTTTTTGTTGATTCGTGGCTGTCCTTGCTTGGAAA
TGCGCTGTAAGAAAGACACGGGGGCAGATTGGCACAAGATACGACACATT
CCATTTATCAAGATCAATGGTCCTTACATCCAAGCCCTTTCTGTTTGA back to topprotein sequence of Tc01v2_p034040.2 >Tc01v2_p034040.2 ID=Tc01v2_p034040.2|Name=Tc01v2_p034040.2|organism=Theobroma cacao|type=polypeptide|length=1116bp
MAEAVLSALLQVIFEKSTSETFETYALLRGTEKEMRKLQGVLSTIQAVLE
DAEDRQAMDKAVKNWLIKLKDVAYDADDLLEEYMTEASRRRLESHDYKKL
SRFILNEVRYFFSQSNPILFRYQMRNKLENIAERLDAVADERFKFHLGDR
LADSRSQFPQRLQSDSYLLESEVLGREADQEKIVTLLLSSADQRDVSVLP
VVGMGGLGKTTLAKLVYNDERVQEHFECRIWVCVSEDFDVKRLMKAIIES
MTGNRCDLQETESIHRRVQELIRGLRFLLVLDDVWNDDQEKWDRLKNSVR
HGSVGSKILVTTRSEKVALVTGTFAPYHLEGLSDEDCWLLFEHRAFKSGR
PEESSSFIAIGKEIAKKCRGVPLAAKSLGSLMYLRRKRSEWLFVKDSEIW
RLVEEENGILPVLRLSYDSLPSHLKQCFAYCSLFPKNCRINKDKLILLWI
AEGFIQVPPGKSPEEVGNEYFNELLWSSFFQNVTTDHDKNIMDCEMHHLL
HDLAKAVAGSSCVTVEVSKRLSVPTGTRYLSVFCADNKIPRGSRNACKLR
SFLLLSGHWKTAEVSRKLILSLKSLRSLDISNTGIKKISKSIGLMIHLRY
LDLSSTLIKRLPNTVCSLFNLQSLILKHCTRLEKLPKDMRKLINLRHLNL
SDCRLLNKLPNGIGDLRSLQTLPVFIVGKEASCSIAELQNLDLHGELEIR
NLENVSNSRCSKSAKRANLKEKWNLQSLKLWWEHVDEVHVKENVEHVIEG
LQPSFELKKLEIKNYVGSKFPGWLMNPCLTNLVELSLIKCQRCVQLPLLQ
KLPALEVLTINEMEATMYFCDDLQGNAGGNGFVSLKTLSIENMSNLLGWT
TNGGQLILPSLKQLVIDGCPNLGSLPELPSVASMKLDDCSMDLLRMVTRI
TTLSDLIISGFSELVQLPQGLLKSNPSLLSLEIRDCLELRSFSGELQTLG
PLQCLTISNCPELESFSELSGLSSLESLWIDRCDSLVSMPGGMTRLNSLR
HVSFSDCENLAALPEAIKYLTCLQTLNIFSCPALETLPEWLGNLVALREM
ELCYCENLLRLPQSMQRLTALQFLLIRGCPCLEMRCKKDTGADWHKIRHI
PFIKINGPYIQALSV* back to top
|