Tc01v2_t033800.1

Overview
NameTc01v2_t033800.1
Unique NameTc01v2_t033800.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length867
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 11 ESTs, 36 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productputative casein kinase II subunit beta-4
NotePutative casein kinase II subunit beta-4
Cross References
External references for this mRNA
DatabaseAccession
GeneID18614535
GenbankXM_007052330.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g033800Tc01v2_g033800Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p033800.1Tc01v2_p033800.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto75394auto75394Theobroma cacaoexon
exon-auto75395auto75395Theobroma cacaoexon
exon-auto75396auto75396Theobroma cacaoexon
exon-auto75397auto75397Theobroma cacaoexon
exon-auto75398auto75398Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto75399auto75399Theobroma cacaoCDS
CDS-auto75400auto75400Theobroma cacaoCDS
CDS-auto75401auto75401Theobroma cacaoCDS
CDS-auto75402auto75402Theobroma cacaoCDS
CDS-auto75403auto75403Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t033800.1 ID=Tc01v2_t033800.1|Name=Tc01v2_t033800.1|organism=Theobroma cacao|type=mRNA|length=867bp
ATGTATAGCCATAGGGATCGAGGAGGGGGGCCGTCGAAATCGGAGCTAGT
GCCTTTGGATCGGAAGCGCATAAATGATGCGCTGGACAAGCATCTAGAGA
AGTCGTCTCCGTCCACTTCGAGGGGCTTGAACAGCAAAGACAAAGAAAGA
TCCTCTGTTCCTTCAACTTCCACTGGAAAATCCCAGCTTGATCATCGCGA
TTCGCGCTCTGCAGCTCTCTCCAAAGCCAAATGTTCTGATGAGGAATCTG
AAACAGACAGTGAAGAATCAGATGTTAGTGGCTCCGACGGAGATGACACA
TCTTGGATCTCATGGTTTTGCAATTTGCGAGGCAATGAGTTTTTCTGTGA
AGTTGATGATGAATACATCCAAGATGACTTTAATCTTTGTGGGTTGAGCA
GTCAAGTTCCATATTATGACTATGCACTTGATTTAATATTGGACGTTGAA
TCTTCTCATGGTGATATGTTCACTGAAGAACAGAATGAATTGGTTGAATC
AGCAGCTGAGATGTTGTATGGTCTTATACATGTCCGTTACATATTAACTA
GCAAGGGAATGTCTGCTATGTTGGAGAAATACAAAAACTATGACTTTGGG
AGATGCCCAAGAGTTTACTGCTGTGGACAACCTTGTCTTCCAGTTGGTCA
GTCAGATATTCCTCGTTCAAGTACCGTGAAAATCTACTGTCCGAAATGTG
AAGATATATATTATCCTCGATCCAAGTATCAAGGCAATATTGATGGAGCT
TATTTTGGAACGACATTCCCACATCTATTTCTGATGTCATATGGTCACCT
AAAGCCGCAAAAGCCAACGCAAAACTATACCCCAAGAGTTTTCGGCTTCA
AGATGCACAAGCCCTGA
back to top

protein sequence of Tc01v2_p033800.1

>Tc01v2_p033800.1 ID=Tc01v2_p033800.1|Name=Tc01v2_p033800.1|organism=Theobroma cacao|type=polypeptide|length=289bp
MYSHRDRGGGPSKSELVPLDRKRINDALDKHLEKSSPSTSRGLNSKDKER
SSVPSTSTGKSQLDHRDSRSAALSKAKCSDEESETDSEESDVSGSDGDDT
SWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVE
SSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMSAMLEKYKNYDFG
RCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGA
YFGTTFPHLFLMSYGHLKPQKPTQNYTPRVFGFKMHKP*
back to top