Tc01v2_t031710.3

Overview
NameTc01v2_t031710.3
Unique NameTc01v2_t031710.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length606
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
Productglutathione S-transferase zeta class, transcript variant X5
NoteGlutathione S-transferase zeta class
Cross References
External references for this mRNA
DatabaseAccession
GeneID18614299
GenbankXM_007051992.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g031710Tc01v2_g031710Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p031710.3Tc01v2_p031710.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto71409auto71409Theobroma cacaoexon
exon-auto71410auto71410Theobroma cacaoexon
exon-auto71411auto71411Theobroma cacaoexon
exon-auto71412auto71412Theobroma cacaoexon
exon-auto71413auto71413Theobroma cacaoexon
exon-auto71414auto71414Theobroma cacaoexon
exon-auto71415auto71415Theobroma cacaoexon
exon-auto71416auto71416Theobroma cacaoexon
exon-auto71417auto71417Theobroma cacaoexon
exon-auto71418auto71418Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto71419auto71419Theobroma cacaoCDS
CDS-auto71420auto71420Theobroma cacaoCDS
CDS-auto71421auto71421Theobroma cacaoCDS
CDS-auto71422auto71422Theobroma cacaoCDS
CDS-auto71423auto71423Theobroma cacaoCDS
CDS-auto71424auto71424Theobroma cacaoCDS
CDS-auto71425auto71425Theobroma cacaoCDS
CDS-auto71426auto71426Theobroma cacaoCDS
CDS-auto71427auto71427Theobroma cacaoCDS
CDS-auto71428auto71428Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t031710.3 ID=Tc01v2_t031710.3|Name=Tc01v2_t031710.3|organism=Theobroma cacao|type=mRNA|length=606bp
ATGGCACCGAAAGATGGTGGCGAGGCGTCTTCCAAGCTCGTTTTGTATTC
ATACTGGCAGAGCTCCTGTTCTTGGCGTGTTCGCTTCGCTTTGAACCTCA
AAGGGCTTTCATATGAGTACAAAGCGGTGAACCTTGCGAAAGGAGAGCAG
TTTACTCCAGATTTTGAGAAGTTGAACCCTCTCCATTTTGTTCCGGTTCT
AGTTGATGGTGATGTTGTAGTCTCTGATTCGTATGCAATCTTGATGTATT
TGGAGGAAAAGTATCCTCAAAGAACTCTCTTACCAGCTGATCCCCAGCAA
AAAGCCCTGAATCTTCAGGTTGCCAGCATTATTAGCTCTAGCATACAGCC
TCTTCTAATGCTGTCAATTCTGAAATATCTTGAGGAAAAGGTTGGCCTAG
AAGAGCGACTTCTATTTGTTCAAACTAATATTGAAAAAGGTTTCCTTGCT
CTTGAGAAGTTGCTGAAAGACTTTGTTGGCAAATATGCCACAGGAGAAGA
AGTATACATGGGTTTTGTCATTTGCAGGCTGATGTATTTATGGCACCTCA
GATTGCTGTGGCTACAGAACGGTTTAAGATTGACATGTCCAAGTTCCCTA
CTTTAA
back to top

protein sequence of Tc01v2_p031710.3

>Tc01v2_p031710.3 ID=Tc01v2_p031710.3|Name=Tc01v2_p031710.3|organism=Theobroma cacao|type=polypeptide|length=202bp
MAPKDGGEASSKLVLYSYWQSSCSWRVRFALNLKGLSYEYKAVNLAKGEQ
FTPDFEKLNPLHFVPVLVDGDVVVSDSYAILMYLEEKYPQRTLLPADPQQ
KALNLQVASIISSSIQPLLMLSILKYLEEKVGLEERLLFVQTNIEKGFLA
LEKLLKDFVGKYATGEEVYMGFVICRLMYLWHLRLLWLQNGLRLTCPSSL
L*
back to top