Tc01v2_t031560.2

Overview
NameTc01v2_t031560.2
Unique NameTc01v2_t031560.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1098
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 6 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Product4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic, transcript variant X2
Note4-hydroxy-tetrahydrodipicolinate synthase 2, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18614282
GenbankXM_007051964.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g031560Tc01v2_g031560Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p031560.2Tc01v2_p031560.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto71022auto71022Theobroma cacaoexon
exon-auto71023auto71023Theobroma cacaoexon
exon-auto71024auto71024Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto71025auto71025Theobroma cacaoCDS
CDS-auto71026auto71026Theobroma cacaoCDS
CDS-auto71027auto71027Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t031560.2 ID=Tc01v2_t031560.2|Name=Tc01v2_t031560.2|organism=Theobroma cacao|type=mRNA|length=1098bp
ATGGCTACTTTGAAGAGCTATGGCGTGCGCTTGGAAGAGTCTACTCACCA
GTTTCCGCGTCCCAATCGCGGCGATAATTACAAGAGGAGAAATGCAAAAT
GGAGGTCTCCACAAGCAGCAGTAATACCTAATTTCCATCTCCCAATGCGT
AGTTTTGAGGTTAAAAACAGAACATCATCAGAAGATATAAAATCTCTCCG
ATTGATAACAGCTATCAAAACCCCATATTTACCTGATGGAAGGTTTGATC
TTGAAGCTTATGATGGCTTGGTGAATATCCAAATTGAAAATGGTGCTGAA
GGTGTAATTGTCGGTGGCACAACTGGCGAGGGCCAGCTGATGAGCTGGGA
TGAACACATAATGCTTATTGGTCATACAGTCAACTGTTTTGGTGGATCAA
TTAAGGTAATTGGTAACACAGGAAGCAACTCAACAAGGGAAGCAATTCAT
GCCACTGAACAAGGTTTTGCAGTTGGAATGCATGCTGCTCTTCACATCAA
TCCTTACTATGGCAAAACATCTCTGGAGGGCTTGGTTTCTCACTTTGATA
GTGTGCTGCCAATGGGCCCCACCATCATATACAATGTGCCATCACGAACT
GGCCAAGATATTCCCCCACGTGTCATCAATACGGTAGCACAGTGTCCTAA
CTTGGCCGGTGTTAAGGAATGTGTTGGAAATGACCGGATTGAGCAGTATA
CAGATAATGGAATTGTAGTGTGGAGTGGGAATGATGATCAGTGCCATGAT
GCTAGGTGGAGCCATGGGGCTACTGGGGTAATTTCTGTTACAAGCAACCT
GATTCCAGGTTTGATGCGAGAACTAATGTTTGGAGGGAAAAACCCTTCGC
TTAATGTGAAGCTCTTACCTCTGATTGAGTGGCTCTTTGAGGAACCCAAC
CCCATTGGCCTAAACACAGCCCTTGCACAACTTGGGGTTGTGAGGCCAGT
TTTCAGGTTACCATATGTACCTCTTCCTCTGGCAAAGAGGGTAGAATTTG
TTAATCTTGTCAGGCAAATTGGGCGGCAGAATTTTGTAGGAGAAAAAGAT
GTTCAGGTTCTTGATGATGATGACTTCATCTTGGTTGGGCGGTATTAG
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protein sequence of Tc01v2_p031560.2

>Tc01v2_p031560.2 ID=Tc01v2_p031560.2|Name=Tc01v2_p031560.2|organism=Theobroma cacao|type=polypeptide|length=366bp
MATLKSYGVRLEESTHQFPRPNRGDNYKRRNAKWRSPQAAVIPNFHLPMR
SFEVKNRTSSEDIKSLRLITAIKTPYLPDGRFDLEAYDGLVNIQIENGAE
GVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIH
ATEQGFAVGMHAALHINPYYGKTSLEGLVSHFDSVLPMGPTIIYNVPSRT
GQDIPPRVINTVAQCPNLAGVKECVGNDRIEQYTDNGIVVWSGNDDQCHD
ARWSHGATGVISVTSNLIPGLMRELMFGGKNPSLNVKLLPLIEWLFEEPN
PIGLNTALAQLGVVRPVFRLPYVPLPLAKRVEFVNLVRQIGRQNFVGEKD
VQVLDDDDFILVGRY*
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