Tc01v2_t031560.1

Overview
NameTc01v2_t031560.1
Unique NameTc01v2_t031560.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1101
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 5 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Product4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic, transcript variant X1
Note4-hydroxy-tetrahydrodipicolinate synthase 2, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18614282
GenbankXM_007051965.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g031560Tc01v2_g031560Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p031560.1Tc01v2_p031560.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto71014auto71014Theobroma cacaoexon
exon-auto71015auto71015Theobroma cacaoexon
exon-auto71016auto71016Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto71017auto71017Theobroma cacaoCDS
CDS-auto71018auto71018Theobroma cacaoCDS
CDS-auto71019auto71019Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t031560.1 ID=Tc01v2_t031560.1|Name=Tc01v2_t031560.1|organism=Theobroma cacao|type=mRNA|length=1101bp
ATGGCTACTTTGAAGAGCTATGGCGTGCGCTTGGAAGAGTCTACTCACCA
GTTTCCGCGTCCCAATCGCGGCGATAATTACAAGAGCAGGAGAAATGCAA
AATGGAGGTCTCCACAAGCAGCAGTAATACCTAATTTCCATCTCCCAATG
CGTAGTTTTGAGGTTAAAAACAGAACATCATCAGAAGATATAAAATCTCT
CCGATTGATAACAGCTATCAAAACCCCATATTTACCTGATGGAAGGTTTG
ATCTTGAAGCTTATGATGGCTTGGTGAATATCCAAATTGAAAATGGTGCT
GAAGGTGTAATTGTCGGTGGCACAACTGGCGAGGGCCAGCTGATGAGCTG
GGATGAACACATAATGCTTATTGGTCATACAGTCAACTGTTTTGGTGGAT
CAATTAAGGTAATTGGTAACACAGGAAGCAACTCAACAAGGGAAGCAATT
CATGCCACTGAACAAGGTTTTGCAGTTGGAATGCATGCTGCTCTTCACAT
CAATCCTTACTATGGCAAAACATCTCTGGAGGGCTTGGTTTCTCACTTTG
ATAGTGTGCTGCCAATGGGCCCCACCATCATATACAATGTGCCATCACGA
ACTGGCCAAGATATTCCCCCACGTGTCATCAATACGGTAGCACAGTGTCC
TAACTTGGCCGGTGTTAAGGAATGTGTTGGAAATGACCGGATTGAGCAGT
ATACAGATAATGGAATTGTAGTGTGGAGTGGGAATGATGATCAGTGCCAT
GATGCTAGGTGGAGCCATGGGGCTACTGGGGTAATTTCTGTTACAAGCAA
CCTGATTCCAGGTTTGATGCGAGAACTAATGTTTGGAGGGAAAAACCCTT
CGCTTAATGTGAAGCTCTTACCTCTGATTGAGTGGCTCTTTGAGGAACCC
AACCCCATTGGCCTAAACACAGCCCTTGCACAACTTGGGGTTGTGAGGCC
AGTTTTCAGGTTACCATATGTACCTCTTCCTCTGGCAAAGAGGGTAGAAT
TTGTTAATCTTGTCAGGCAAATTGGGCGGCAGAATTTTGTAGGAGAAAAA
GATGTTCAGGTTCTTGATGATGATGACTTCATCTTGGTTGGGCGGTATTA
G
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protein sequence of Tc01v2_p031560.1

>Tc01v2_p031560.1 ID=Tc01v2_p031560.1|Name=Tc01v2_p031560.1|organism=Theobroma cacao|type=polypeptide|length=367bp
MATLKSYGVRLEESTHQFPRPNRGDNYKSRRNAKWRSPQAAVIPNFHLPM
RSFEVKNRTSSEDIKSLRLITAIKTPYLPDGRFDLEAYDGLVNIQIENGA
EGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAI
HATEQGFAVGMHAALHINPYYGKTSLEGLVSHFDSVLPMGPTIIYNVPSR
TGQDIPPRVINTVAQCPNLAGVKECVGNDRIEQYTDNGIVVWSGNDDQCH
DARWSHGATGVISVTSNLIPGLMRELMFGGKNPSLNVKLLPLIEWLFEEP
NPIGLNTALAQLGVVRPVFRLPYVPLPLAKRVEFVNLVRQIGRQNFVGEK
DVQVLDDDDFILVGRY*
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