Tc01v2_t031280.1

Overview
NameTc01v2_t031280.1
Unique NameTc01v2_t031280.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1002
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 20 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
Productglyoxylate/hydroxypyruvate reductase HPR3
NoteGlyoxylate/hydroxypyruvate reductase HPR3
Cross References
External references for this mRNA
DatabaseAccession
GeneID18614256
GenbankXM_007051926.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g031280Tc01v2_g031280Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p031280.1Tc01v2_p031280.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto70474auto70474Theobroma cacaoexon
exon-auto70475auto70475Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto70476auto70476Theobroma cacaoCDS
CDS-auto70477auto70477Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t031280.1 ID=Tc01v2_t031280.1|Name=Tc01v2_t031280.1|organism=Theobroma cacao|type=mRNA|length=1002bp
ATGGCCTATTATCGAGGGCAAGAAAGCCATGTTCATCCATCTCAAAATCT
TCCACTAGTCTTAGTCCTTGAGCCACCACCAGTCTTTAAATTTCATGGGG
ACCAACTGTTGAAAAAATTCCAATTCTTGAAAGCATGGGAATCACCACTC
CCTCTGGACCAATTCTTGACTATACATGCACATTCAGTCCAAGCCCTTCT
CTCGCCTGGCACACATCCAGTCACGCTTGAAACACTCAGGCTGCTGCCAT
CTCTGGGGCTGATCGTCACCACCAGTGTTGGTCTCAACCATATTGACCTG
CCAGAGTGCCGCAGGCGTGGAATTTCTATAGCCAATGCTGGAAACTTGTA
CTCTGAAGACGTCGCTGATTTGGCTGTTGGCCTGCTGATTGATGTGCTCC
GAAAAATCTCTGTTGCTGATCGGTATGTAAAACGGCAGCTTTGGCCCAGT
GAAGGAGAGTTTCCTCTTGGAATCAAGTTAAGAGGCAGACAAGTTGGAAT
TGTTGGCTTGGGAAGCATTGGCTTTGAAGTAGCAAAAAGGCTCGATGCAT
TTGGATGCAGTATCTTGTACAACTCGAGAAGGAAGAAGCCATCCATACAC
TATCCATACTATTCCAATATCTGTGAACTTGCATCTAACTGTGATGTTCT
TATAATTTGCTGTGCATTAACTGACAAAACCCATCACATGATTAACAAGG
AAGTTCTGCTAGCAATGGGGAAGAAAGGAGTCATTGTTAATGTCGGACGC
GGCGCTATTATAGACGAGCAGGAAATGGTGGGGTGTTTAATGCGAGGAGA
GATAGCAGGTGCTGGCTTGGATGTGTTCGAGAAGGAGCCTGATGTTCCGA
AAGAGCTCTTTGATTTGGACAATGTTGTGCTGTCACCGCATAGAGCTGTT
CATTCACAGGAAACTTTGATGGCTTTGTGTGACCTTGTGGTGGGGAATTT
TGAAGCTTTCTTCTCAAATAAACCCTTACTTACCCCAGTAGTTGATGAAT
GA
back to top

protein sequence of Tc01v2_p031280.1

>Tc01v2_p031280.1 ID=Tc01v2_p031280.1|Name=Tc01v2_p031280.1|organism=Theobroma cacao|type=polypeptide|length=334bp
MAYYRGQESHVHPSQNLPLVLVLEPPPVFKFHGDQLLKKFQFLKAWESPL
PLDQFLTIHAHSVQALLSPGTHPVTLETLRLLPSLGLIVTTSVGLNHIDL
PECRRRGISIANAGNLYSEDVADLAVGLLIDVLRKISVADRYVKRQLWPS
EGEFPLGIKLRGRQVGIVGLGSIGFEVAKRLDAFGCSILYNSRRKKPSIH
YPYYSNICELASNCDVLIICCALTDKTHHMINKEVLLAMGKKGVIVNVGR
GAIIDEQEMVGCLMRGEIAGAGLDVFEKEPDVPKELFDLDNVVLSPHRAV
HSQETLMALCDLVVGNFEAFFSNKPLLTPVVDE*
back to top