Tc01v2_t030600.1

Overview
NameTc01v2_t030600.1
Unique NameTc01v2_t030600.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length966
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 27 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
Product( )-neomenthol dehydrogenase, transcript variant X1
Note( )-neomenthol dehydrogenase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18614184
GenbankXM_018114104.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g030600Tc01v2_g030600Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p030600.1Tc01v2_p030600.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto68846auto68846Theobroma cacaoexon
exon-auto68847auto68847Theobroma cacaoexon
exon-auto68848auto68848Theobroma cacaoexon
exon-auto68849auto68849Theobroma cacaoexon
exon-auto68850auto68850Theobroma cacaoexon
exon-auto68851auto68851Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto68852auto68852Theobroma cacaoCDS
CDS-auto68853auto68853Theobroma cacaoCDS
CDS-auto68854auto68854Theobroma cacaoCDS
CDS-auto68855auto68855Theobroma cacaoCDS
CDS-auto68856auto68856Theobroma cacaoCDS
CDS-auto68857auto68857Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t030600.1 ID=Tc01v2_t030600.1|Name=Tc01v2_t030600.1|organism=Theobroma cacao|type=mRNA|length=966bp
ATGTCAGAGCTGCAATTCTGTCAAAATATGTCTGTCATTTGGCCAGAAGA
GGGTTCTTTCTATTTCTCCTTATCAATGGCAGAAGTAACGAAGAGATATG
CAGTGGTTACTGGTGCAAACAAGGGAATTGGATTGGAAATATGTAAACAG
CTAGCTTCAAACGGAATCACGGTGTTGTTAACTGCTAGAGATGAGAAGAG
GGGTCTTGAAGCTGTTGGAAAGCTGAAACAGTGCGGCCTATCTGATAATG
TAGTTTTTCATCAACTCGATGTTGCAGATCCTGCCAGTATTGCTCCTTTA
GTAGACTTCATCAAAACACAATTTGGAAAGCTTGATATTTTGGTGAATAA
TGCAGGAATTAGTGGCGTAGAAGCCGATGCTGATGCTATTAGAGCTGCAG
GGTTTGGTAAGCCTGGTATACAACTAAACTGGAGTGAGGTAATGACTCAA
ACATCCCAGTTGTCTGAGGAATGCGTTGAGACAAACTACTATGGTGCCAA
AAGAATGTGTGAATCGCTTATTCCCCTTCTCCAGATATCTGATTCACCAA
GGATCGTAAATGTTTCCTCCTTCATGGGAAGGTTAGAGAAAGTATCAAAT
GAATGGGCTAAAGCAGTCTTCAGTGATGCTGAAAATCTTACAGAAGAGAA
AGTGGATGAGGTATTGAGCCAGTATCTGAAAGATTTCAAGGAGGGTTCAT
TGGAAGCTAAGGGCTGGCCTACTTTTATGTCAGCCTATATACTTTCTAAA
GCAGCTATGAATGCCTACACAAGGATCCTGGCTAAGAAGTACCCCGGTTT
CTGCATCAACTGTGTTTGCCCAGGCTTTGTTAAAACAGACATCAACTACA
ACTGTGGGATCTTAACTGTTGAAGAAGGTGCTGGGAATGCTGTGAGATTA
GCATTGTTGCCTAATGGTGGCCCTTCTGGTCTCTTCTTTCATCGGATGCA
AGAGTCAGATTTTTGA
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protein sequence of Tc01v2_p030600.1

>Tc01v2_p030600.1 ID=Tc01v2_p030600.1|Name=Tc01v2_p030600.1|organism=Theobroma cacao|type=polypeptide|length=322bp
MSELQFCQNMSVIWPEEGSFYFSLSMAEVTKRYAVVTGANKGIGLEICKQ
LASNGITVLLTARDEKRGLEAVGKLKQCGLSDNVVFHQLDVADPASIAPL
VDFIKTQFGKLDILVNNAGISGVEADADAIRAAGFGKPGIQLNWSEVMTQ
TSQLSEECVETNYYGAKRMCESLIPLLQISDSPRIVNVSSFMGRLEKVSN
EWAKAVFSDAENLTEEKVDEVLSQYLKDFKEGSLEAKGWPTFMSAYILSK
AAMNAYTRILAKKYPGFCINCVCPGFVKTDINYNCGILTVEEGAGNAVRL
ALLPNGGPSGLFFHRMQESDF*
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