Tc01v2_t030280.2

Overview
NameTc01v2_t030280.2
Unique NameTc01v2_t030280.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1299
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productriboflavin biosynthesis protein PYRD, chloroplastic, transcript variant X2
NoteRiboflavin biosynthesis protein PYRD, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18614149
GenbankXM_018128531.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g030280Tc01v2_g030280Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p030280.2Tc01v2_p030280.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto68239auto68239Theobroma cacaoexon
exon-auto68240auto68240Theobroma cacaoexon
exon-auto68241auto68241Theobroma cacaoexon
exon-auto68242auto68242Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto68243auto68243Theobroma cacaoCDS
CDS-auto68244auto68244Theobroma cacaoCDS
CDS-auto68245auto68245Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t030280.2 ID=Tc01v2_t030280.2|Name=Tc01v2_t030280.2|organism=Theobroma cacao|type=mRNA|length=1299bp
ATGATGCAAATTCAATTACACTCCTTTCCACATTTCACTCTAACTCCACC
CAACCTCTCACCTTCTCCCCACGTTTTCACTTCCTTTTCATCAAGACACC
AGCTTGCCGAACTTGTGGTAAATGGACATTTCCCTTCTTGGTCTTTTAAT
TCACTCAAAAGGGTATCTAAATTTCAAACTAGTTTGAGAAAATGTGGTGG
TCTGGTTAGGGTCAGATGTGGAGTGGTGGAAGATGAGAGTGTTGATGATG
CGTTTTACATGAGGAGGTGTGTGGAGTTGGCAAGAACTGCGATTGGCTGC
ACAAGTCCTAATCCTATGGTGGGTTGTGTTATTGTAAAAGATGGTAAGAT
TGTTGGTGAAGGGTTTCATCCGAAAGCTGGCCAGCCTCATGCTGAGGTGT
TTGCCTTGAGAAATGCTGGGGAGTTGGCTGAGAATGCAACTGCTTATGTG
AGTTTGGAACCATGTAACCACTTTGGAAGAACTCCACCATGTACTGAAGC
ATTGATTAAAGCAAAAGTGAAAAGGGTGGTGGTTGGTATGGTGGATCCTA
ACCCAATTGTAGCTTCAAAGGGGTTGGATAGACTGCGAGATGCCGGAATT
GATGTGACTGTGGGTGTTGAAGAAGAGTTATGCAAGAGGCTCATCGAAGC
CTATATCCATCAAATGTTGACTGGGAAGCCTTTTGTTACATTAAGATACT
CCCTCGCTGTCAATGGCCACTTTTTGGACCAGCTTGGGGATGGAGTTACA
GAGACTGGTGGATACTACTCAAAATTGTTACAGGAATATGATGCAGTGAT
ACTTTCTGCCTCCTTAACTGAGAAGTCCTCAATTCCTACATCACAGGAGC
CTGGTGCCAATCAGCCTCTTCAAATTATAGTAGCAAGAAATCCTTGTCGA
CTTCCTGGTCTTTCTAAAGAAACTTCTAAGATGATAATATTTGCAGACAA
AAAAACAGCCATAGATTCAGATTTGGCTCAAAAAGGATTTGAGGCAGTGG
TTTTGGAGCGGATAAATTTGACTTCAATTCTAGAACACTGTAAGCACCAG
GGTTTATGTAGTGTTTTGTTGGATATGAGGGGCAGCTTTGGTGAGCTTGA
AGTACTTCTCAAAGAAGCAATTGAGCAGAATGTGTTGCAAAAACTAGTGA
TGGAAGTGTTGCCGTTTTGGGATGAATCAAATGGTGGAGACTCACTCGTG
GCCTTGAATAGTCTGGCTGAAAGACTAGAAGTGAAGAATTTACAATCCAA
GATTTCAAATAAAAGCATTGTGCTTGAGGGATATCTTCAACATAGGTGA
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protein sequence of Tc01v2_p030280.2

>Tc01v2_p030280.2 ID=Tc01v2_p030280.2|Name=Tc01v2_p030280.2|organism=Theobroma cacao|type=polypeptide|length=433bp
MMQIQLHSFPHFTLTPPNLSPSPHVFTSFSSRHQLAELVVNGHFPSWSFN
SLKRVSKFQTSLRKCGGLVRVRCGVVEDESVDDAFYMRRCVELARTAIGC
TSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRNAGELAENATAYV
SLEPCNHFGRTPPCTEALIKAKVKRVVVGMVDPNPIVASKGLDRLRDAGI
DVTVGVEEELCKRLIEAYIHQMLTGKPFVTLRYSLAVNGHFLDQLGDGVT
ETGGYYSKLLQEYDAVILSASLTEKSSIPTSQEPGANQPLQIIVARNPCR
LPGLSKETSKMIIFADKKTAIDSDLAQKGFEAVVLERINLTSILEHCKHQ
GLCSVLLDMRGSFGELEVLLKEAIEQNVLQKLVMEVLPFWDESNGGDSLV
ALNSLAERLEVKNLQSKISNKSIVLEGYLQHR*
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