Tc01v2_t029990.1

Overview
NameTc01v2_t029990.1
Unique NameTc01v2_t029990.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1116
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 27 ESTs, 56 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productbifunctional L-3-cyanoalanine synthase/cysteine synthase 1, mitochondrial
NoteL-3-cyanoalanine synthase 1, mitochondrial
Cross References
External references for this mRNA
DatabaseAccession
GeneID18614120
GenbankXM_018128825.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g029990Tc01v2_g029990Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p029990.1Tc01v2_p029990.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto67264auto67264Theobroma cacaoexon
exon-auto67265auto67265Theobroma cacaoexon
exon-auto67266auto67266Theobroma cacaoexon
exon-auto67267auto67267Theobroma cacaoexon
exon-auto67268auto67268Theobroma cacaoexon
exon-auto67269auto67269Theobroma cacaoexon
exon-auto67270auto67270Theobroma cacaoexon
exon-auto67271auto67271Theobroma cacaoexon
exon-auto67272auto67272Theobroma cacaoexon
exon-auto67273auto67273Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto67274auto67274Theobroma cacaoCDS
CDS-auto67275auto67275Theobroma cacaoCDS
CDS-auto67276auto67276Theobroma cacaoCDS
CDS-auto67277auto67277Theobroma cacaoCDS
CDS-auto67278auto67278Theobroma cacaoCDS
CDS-auto67279auto67279Theobroma cacaoCDS
CDS-auto67280auto67280Theobroma cacaoCDS
CDS-auto67281auto67281Theobroma cacaoCDS
CDS-auto67282auto67282Theobroma cacaoCDS
CDS-auto67283auto67283Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t029990.1 ID=Tc01v2_t029990.1|Name=Tc01v2_t029990.1|organism=Theobroma cacao|type=mRNA|length=1116bp
ATGGCTGCTCTAAGGAGCTTCCTCAAGAAAAGATCTTTAACATGCAACGA
GCTCATGATGGCAAGGAGGCTGGTCTCCACAGAACCCATCATTGAATCTT
CTTCTTTTGCTCAAAGACTCAGAGATCTCCCCAAGGATCTTCCTGGTACT
CAAATCAAGAGGGAAGTTTCCCAGCTAATTGGAAGAACACCCCTTGTTTT
TCTTAATAAAGTAACTGAAGGCTGTGGAGCATATATTGCTGTGAAGCAAG
AGATGATGCAACCCACTGCTAGCATCAAAGACAGACCAGCAATGGCCATG
ATCGCAGATGCAGAAAAGAAAAACTTAATTGCTCCAGGAAAGACAACTCT
GATAGAGCCCACATCCGGTAACATGGGGATAAGTATGGCATTTATGGCAA
CCATGAAAGGTTATAAGATGGTTCTAACCATGCCTTCTTACACAAGCTTG
GAGAGAAGAGTGACCATGAGAGCATTTGGAGCTGATTTAATACTCACTGA
TCCCACCAAGGGGATGGGAGGGACGGTGAAGAAGGCTTATGAACTTTTAG
AGTCTACACCAAATGCTTTCATGTTGCAACAGTTTTCAAATCCAGCCAAC
ACTCAGGTGCATTTTGAAACTACAGGCCCTGAGATCTGGGAGGATACTCT
CGGTAAAGTTGACATCTTTGTAATGGGAATAGGGAGTGGTGGTACTGTTT
CTGGTGTCGGACAGTACCTCAAATCCCAGAATCCTAATGTAAAGATATAT
GGAGTGGAGCCTGCTGAAAGTAATGTATTGAATGGTGGCAAACCAGGTCC
TCATCATATTACTGGCAATGGAGTTGGGTTCAAGCCGGATATTCTGGACA
TGGATGTAATGGAAAAAGTTCTTGAGGTCAGCAGTGAAGATGCAGTAAAT
ATGGCAAGGGAATTGGCATTGAAAGAGGGGCTCATGGTTGGGATATCATC
CGGGGCCAACACTGTTGCAGCACTCAAACTTGCAAGATTGCCTGAGAACA
AAGGCAAATTGATTGTGACTGTTCATCCAAGTTTTGGGGAGCGGTACTTG
TCCTCGGTCCTATTCCAAGAACTAAGGAAAGAAGCTGAAAACATGCAACC
AGTTGCAGTTGACTAA
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protein sequence of Tc01v2_p029990.1

>Tc01v2_p029990.1 ID=Tc01v2_p029990.1|Name=Tc01v2_p029990.1|organism=Theobroma cacao|type=polypeptide|length=372bp
MAALRSFLKKRSLTCNELMMARRLVSTEPIIESSSFAQRLRDLPKDLPGT
QIKREVSQLIGRTPLVFLNKVTEGCGAYIAVKQEMMQPTASIKDRPAMAM
IADAEKKNLIAPGKTTLIEPTSGNMGISMAFMATMKGYKMVLTMPSYTSL
ERRVTMRAFGADLILTDPTKGMGGTVKKAYELLESTPNAFMLQQFSNPAN
TQVHFETTGPEIWEDTLGKVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIY
GVEPAESNVLNGGKPGPHHITGNGVGFKPDILDMDVMEKVLEVSSEDAVN
MARELALKEGLMVGISSGANTVAALKLARLPENKGKLIVTVHPSFGERYL
SSVLFQELRKEAENMQPVAVD*
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