Tc01v2_t029690.1

Overview
NameTc01v2_t029690.1
Unique NameTc01v2_t029690.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1275
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 5 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
ProductCAAX prenyl protease 1 homolog
NoteCAAX prenyl protease 1 homolog
Cross References
External references for this mRNA
DatabaseAccession
GeneID18614089
GenbankXM_018128483.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g029690Tc01v2_g029690Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p029690.1Tc01v2_p029690.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto66650auto66650Theobroma cacaoexon
exon-auto66651auto66651Theobroma cacaoexon
exon-auto66652auto66652Theobroma cacaoexon
exon-auto66653auto66653Theobroma cacaoexon
exon-auto66654auto66654Theobroma cacaoexon
exon-auto66655auto66655Theobroma cacaoexon
exon-auto66656auto66656Theobroma cacaoexon
exon-auto66657auto66657Theobroma cacaoexon
exon-auto66658auto66658Theobroma cacaoexon
exon-auto66659auto66659Theobroma cacaoexon
exon-auto66660auto66660Theobroma cacaoexon
exon-auto66661auto66661Theobroma cacaoexon
exon-auto66662auto66662Theobroma cacaoexon
exon-auto66663auto66663Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto66664auto66664Theobroma cacaoCDS
CDS-auto66665auto66665Theobroma cacaoCDS
CDS-auto66666auto66666Theobroma cacaoCDS
CDS-auto66667auto66667Theobroma cacaoCDS
CDS-auto66668auto66668Theobroma cacaoCDS
CDS-auto66669auto66669Theobroma cacaoCDS
CDS-auto66670auto66670Theobroma cacaoCDS
CDS-auto66671auto66671Theobroma cacaoCDS
CDS-auto66672auto66672Theobroma cacaoCDS
CDS-auto66673auto66673Theobroma cacaoCDS
CDS-auto66674auto66674Theobroma cacaoCDS
CDS-auto66675auto66675Theobroma cacaoCDS
CDS-auto66676auto66676Theobroma cacaoCDS
CDS-auto66677auto66677Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t029690.1 ID=Tc01v2_t029690.1|Name=Tc01v2_t029690.1|organism=Theobroma cacao|type=mRNA|length=1275bp
ATGGCGTTCCTCTACATGGAAGCTGTTGTTTGTTTCATGATATTAATGTA
CTTCTTTGAAACTTATCTGGATCTGCGACAACATGCTGCTCTCAAACTGC
CAACTCTTCCAAAAACATTGGAAGGTGTAATCAGCCAAGAGAAATTTGAA
AAGTCTCGAGCCTATAGTCTTGATAAGAGCCACTTCCATTTTGTTCATGA
GTTTGTGACAATCTTGATGGACTCTGCAATTTTGTTCTTCGGCATATTGC
CTTGGTTTTGGAAGAAATCAGGAAATTTCTTGCCTTTAGTTGGTCTAAAT
GCAGAGAATGAAATACTGCACACCCTTGCATTTTTAGCTGGTGTTATGAT
ATGGTCACAGATCACTGACTTACCCTTTTCTCTCTATTCAACTTTTGTGA
TTGAGGCCCGACATGGTTTCAACAAACAAACAATATGGTTGTTCTTTAGG
GACCTTATCAAAGGAATGTGTCTTGCTATTGTACTTGGTCCACCCATTGT
TTCTGCTATTATTGTGATAGTACAGAAAGGAGGTCCATATCTGGCTATCT
ATCTTTGGGCATTTATGTTTGTCCTTTCTCTAGTGATGATGACACTTTAC
CCTGTTCTAATAGCCCCACTCTTTAACAAGTTTACCCCTCTTCCAGATGG
AGAGCTCAGGCTTAAGATTGAGAAACTTGCTTCCTCCCTTCATTTTCCGT
TAAAGAAGTTATTTGTTGTTGATGGATCCACAAGATCAAGCCATAGCAAT
GCGTATATGTATGGGTTCTATAAGAACAAGCGCATTGTCCTTTATGACAC
TTTGATTCAGCAGTGCAAAAATGACGAGGAAATTGTAGCTGTTATTGCTC
ATGAACTGGGGCATTGGAAGCTTAATCATACCATGTACTCGTTTATTGCT
GTGCAGATTCTTACATTTTTGCAATTCGGAGGTTATACTCTGGTCAGGAA
CTCAACTGATCTTTTCCGAAGTTTTGGGTTTGACACACAGCCAGTACTAA
TCGGCCTTATCATATTTCAGCATACTGTAATACCAATCCAACACCTTGTA
AGCTTTGGTCTCAATCTTGTAAGCCGGTCCTTTGAATTTCAGGCTGATGC
GTTTGCTAAGAAGCTTGGCTATGGATCTGCATTGCGTGCTGGTCTTGTGA
AGCTGCAGGAAGAAAATTTGTCAGCTATGAATACAGATCCATGGTACTCT
GCGTATCACTACTCTCATCCTCCCCTGGTAGAAAGATTGGCTGCAATTGA
TGAACCTGACAAAAAGGAAGACTGA
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protein sequence of Tc01v2_p029690.1

>Tc01v2_p029690.1 ID=Tc01v2_p029690.1|Name=Tc01v2_p029690.1|organism=Theobroma cacao|type=polypeptide|length=425bp
MAFLYMEAVVCFMILMYFFETYLDLRQHAALKLPTLPKTLEGVISQEKFE
KSRAYSLDKSHFHFVHEFVTILMDSAILFFGILPWFWKKSGNFLPLVGLN
AENEILHTLAFLAGVMIWSQITDLPFSLYSTFVIEARHGFNKQTIWLFFR
DLIKGMCLAIVLGPPIVSAIIVIVQKGGPYLAIYLWAFMFVLSLVMMTLY
PVLIAPLFNKFTPLPDGELRLKIEKLASSLHFPLKKLFVVDGSTRSSHSN
AYMYGFYKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIA
VQILTFLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPIQHLV
SFGLNLVSRSFEFQADAFAKKLGYGSALRAGLVKLQEENLSAMNTDPWYS
AYHYSHPPLVERLAAIDEPDKKED*
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