Tc01v2_t029260.4

Overview
NameTc01v2_t029260.4
Unique NameTc01v2_t029260.4
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1224
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
Productphosphatidylinositol 4-phosphate 5-kinase 10, transcript variant X2
NotePutative Phosphatidylinositol 4-phosphate 5-kinase 10
Cross References
External references for this mRNA
DatabaseAccession
GeneID18614041
GenbankXM_018116222.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g029260Tc01v2_g029260Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p029260.4Tc01v2_p029260.4Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto65911auto65911Theobroma cacaoexon
exon-auto65912auto65912Theobroma cacaoexon
exon-auto65913auto65913Theobroma cacaoexon
exon-auto65914auto65914Theobroma cacaoexon
exon-auto65915auto65915Theobroma cacaoexon
exon-auto65916auto65916Theobroma cacaoexon
exon-auto65917auto65917Theobroma cacaoexon
exon-auto65918auto65918Theobroma cacaoexon
exon-auto65919auto65919Theobroma cacaoexon
exon-auto65920auto65920Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto65921auto65921Theobroma cacaoCDS
CDS-auto65922auto65922Theobroma cacaoCDS
CDS-auto65923auto65923Theobroma cacaoCDS
CDS-auto65924auto65924Theobroma cacaoCDS
CDS-auto65925auto65925Theobroma cacaoCDS
CDS-auto65926auto65926Theobroma cacaoCDS
CDS-auto65927auto65927Theobroma cacaoCDS
CDS-auto65928auto65928Theobroma cacaoCDS
CDS-auto65929auto65929Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t029260.4 ID=Tc01v2_t029260.4|Name=Tc01v2_t029260.4|organism=Theobroma cacao|type=mRNA|length=1224bp
ATGGCACTCTCAGACAAGGAGCTTTCAGCAGCGGACTTAAGAGCTACACA
AAGAAACTGGGTTCAATATTCTAAACAGCACTCTAAGAATCTCCCTCCAG
GATCCATTACTGACTTCGAATGGAAGGATTACTGTCCTAAAGCTTTCAGA
CTTATACAAGAGCTTGATAACATCGACAACGATGACTACATGATGTCAGT
TTGTAGTGACGAAACTATAAGGAAGGCCTCGTCAACGTTGAGACCTGGAA
ACCTGTTCCTTTTGTCCAATGATAGCCGATTTGCAATAAAAACACTGCGG
AAATCTCAACTCAAGGTCCTCATAGAAATGCTTCCAATCTACTATAACCA
TCTCAGAAAGTTCCGCAACACAGTATTGAACAAGCTGTATGGACTTCATG
TTGTGAAACCAGTTGGAGGTGTCAAGGTCTACTTTGTGGTTGTGGCAAAC
ATATTCAAGTCAGATTTACTGATGCATCGGTGTTTTGACCTCAAAGGCTC
ATTACAAGGTCGAAAAGTCAAAAAAATGAGAGTCCGAGAGAAAACTCTTC
ATAAGGAGTCGGATCTTGACTTTCTCTTTTACCTTGAACCATTGGTCCGA
CATAGGCTTTTGGCGCAAATCAAGCATGATTGTGCTTTTCTGGAGGCTGT
AGGCATCATGAATTACAGTCTGTTGCTTGGCTTTCATATAAAAGAATCAC
CTCAAGGTTTCTTGGATGGTGGAAGTGCATTTTGTCCTGACTCCCCACGT
CGAGGATCTGTTGACAGCAGATGTTCCTGCAACGACATGAGAATTTCCAA
TGACATGTTGCATCAAAGTGATTTATCTTCACAAAGATCCTCCATCTCTT
CAAATCGAGATTCAATTGACAGCAGGAATTGCACGACGGAATTGACTTTT
CGTGATCACTGGCTACAAAATAATAGTTGTACGTCTAAATTTGGTGAAGA
AATGTCAGCACGCGGTGTTCGCATATCGTGGAATGGAACAGGAAGTGTAT
CAACACGTCAAATTTCCAGGAGGCGAGAGTGCCATGATGTTCTTTTATAT
TTTGGAATAGTGGATTTTTTTCAAGATTACGGTGTGATCAAACGTATTGA
GCATGCTTACAAGTCATTGCAGTTCGATCCAAAGATGATTGCAGCTGTGA
ATCCCAAAGTATATTCTTCTCGCTTTCAGGCATTCATCAGCGACATATTC
AAAGCAGATGACTCTCTCCACTGA
back to top

protein sequence of Tc01v2_p029260.4

>Tc01v2_p029260.4 ID=Tc01v2_p029260.4|Name=Tc01v2_p029260.4|organism=Theobroma cacao|type=polypeptide|length=408bp
MALSDKELSAADLRATQRNWVQYSKQHSKNLPPGSITDFEWKDYCPKAFR
LIQELDNIDNDDYMMSVCSDETIRKASSTLRPGNLFLLSNDSRFAIKTLR
KSQLKVLIEMLPIYYNHLRKFRNTVLNKLYGLHVVKPVGGVKVYFVVVAN
IFKSDLLMHRCFDLKGSLQGRKVKKMRVREKTLHKESDLDFLFYLEPLVR
HRLLAQIKHDCAFLEAVGIMNYSLLLGFHIKESPQGFLDGGSAFCPDSPR
RGSVDSRCSCNDMRISNDMLHQSDLSSQRSSISSNRDSIDSRNCTTELTF
RDHWLQNNSCTSKFGEEMSARGVRISWNGTGSVSTRQISRRRECHDVLLY
FGIVDFFQDYGVIKRIEHAYKSLQFDPKMIAAVNPKVYSSRFQAFISDIF
KADDSLH*
back to top