Tc01v2_t029260.3

Overview
NameTc01v2_t029260.3
Unique NameTc01v2_t029260.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1224
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Productphosphatidylinositol 4-phosphate 5-kinase 10, transcript variant X3
NotePutative Phosphatidylinositol 4-phosphate 5-kinase 10
Cross References
External references for this mRNA
DatabaseAccession
GeneID18614041
GenbankXM_018116224.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g029260Tc01v2_g029260Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p029260.3Tc01v2_p029260.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto65889auto65889Theobroma cacaoexon
exon-auto65890auto65890Theobroma cacaoexon
exon-auto65891auto65891Theobroma cacaoexon
exon-auto65892auto65892Theobroma cacaoexon
exon-auto65893auto65893Theobroma cacaoexon
exon-auto65894auto65894Theobroma cacaoexon
exon-auto65895auto65895Theobroma cacaoexon
exon-auto65896auto65896Theobroma cacaoexon
exon-auto65897auto65897Theobroma cacaoexon
exon-auto65898auto65898Theobroma cacaoexon
exon-auto65899auto65899Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto65900auto65900Theobroma cacaoCDS
CDS-auto65901auto65901Theobroma cacaoCDS
CDS-auto65902auto65902Theobroma cacaoCDS
CDS-auto65903auto65903Theobroma cacaoCDS
CDS-auto65904auto65904Theobroma cacaoCDS
CDS-auto65905auto65905Theobroma cacaoCDS
CDS-auto65906auto65906Theobroma cacaoCDS
CDS-auto65907auto65907Theobroma cacaoCDS
CDS-auto65908auto65908Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t029260.3 ID=Tc01v2_t029260.3|Name=Tc01v2_t029260.3|organism=Theobroma cacao|type=mRNA|length=1224bp
ATGGCACTCTCAGACAAGGAGCTTTCAGCAGCGGACTTAAGAGCTACACA
AAGAAACTGGGTTCAATATTCTAAACAGCACTCTAAGAATCTCCCTCCAG
GATCCATTACTGACTTCGAATGGAAGGATTACTGTCCTAAAGCTTTCAGA
CTTATACAAGAGCTTGATAACATCGACAACGATGACTACATGATGTCAGT
TTGTAGTGACGAAACTATAAGGAAGGCCTCGTCAACGTTGAGACCTGGAA
ACCTGTTCCTTTTGTCCAATGATAGCCGATTTGCAATAAAAACACTGCGG
AAATCTCAACTCAAGGTCCTCATAGAAATGCTTCCAATCTACTATAACCA
TCTCAGAAAGTTCCGCAACACAGTATTGAACAAGCTGTATGGACTTCATG
TTGTGAAACCAGTTGGAGGTGTCAAGGTCTACTTTGTGGTTGTGGCAAAC
ATATTCAAGTCAGATTTACTGATGCATCGGTGTTTTGACCTCAAAGGCTC
ATTACAAGGTCGAAAAGTCAAAAAAATGAGAGTCCGAGAGAAAACTCTTC
ATAAGGAGTCGGATCTTGACTTTCTCTTTTACCTTGAACCATTGGTCCGA
CATAGGCTTTTGGCGCAAATCAAGCATGATTGTGCTTTTCTGGAGGCTGT
AGGCATCATGAATTACAGTCTGTTGCTTGGCTTTCATATAAAAGAATCAC
CTCAAGGTTTCTTGGATGGTGGAAGTGCATTTTGTCCTGACTCCCCACGT
CGAGGATCTGTTGACAGCAGATGTTCCTGCAACGACATGAGAATTTCCAA
TGACATGTTGCATCAAAGTGATTTATCTTCACAAAGATCCTCCATCTCTT
CAAATCGAGATTCAATTGACAGCAGGAATTGCACGACGGAATTGACTTTT
CGTGATCACTGGCTACAAAATAATAGTTGTACGTCTAAATTTGGTGAAGA
AATGTCAGCACGCGGTGTTCGCATATCGTGGAATGGAACAGGAAGTGTAT
CAACACGTCAAATTTCCAGGAGGCGAGAGTGCCATGATGTTCTTTTATAT
TTTGGAATAGTGGATTTTTTTCAAGATTACGGTGTGATCAAACGTATTGA
GCATGCTTACAAGTCATTGCAGTTCGATCCAAAGATGATTGCAGCTGTGA
ATCCCAAAGTATATTCTTCTCGCTTTCAGGCATTCATCAGCGACATATTC
AAAGCAGATGACTCTCTCCACTGA
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protein sequence of Tc01v2_p029260.3

>Tc01v2_p029260.3 ID=Tc01v2_p029260.3|Name=Tc01v2_p029260.3|organism=Theobroma cacao|type=polypeptide|length=408bp
MALSDKELSAADLRATQRNWVQYSKQHSKNLPPGSITDFEWKDYCPKAFR
LIQELDNIDNDDYMMSVCSDETIRKASSTLRPGNLFLLSNDSRFAIKTLR
KSQLKVLIEMLPIYYNHLRKFRNTVLNKLYGLHVVKPVGGVKVYFVVVAN
IFKSDLLMHRCFDLKGSLQGRKVKKMRVREKTLHKESDLDFLFYLEPLVR
HRLLAQIKHDCAFLEAVGIMNYSLLLGFHIKESPQGFLDGGSAFCPDSPR
RGSVDSRCSCNDMRISNDMLHQSDLSSQRSSISSNRDSIDSRNCTTELTF
RDHWLQNNSCTSKFGEEMSARGVRISWNGTGSVSTRQISRRRECHDVLLY
FGIVDFFQDYGVIKRIEHAYKSLQFDPKMIAAVNPKVYSSRFQAFISDIF
KADDSLH*
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