Tc01v2_t028800.1

Overview
NameTc01v2_t028800.1
Unique NameTc01v2_t028800.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1557
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productbeclin-1-like protein
NoteBeclin-1-like protein
Cross References
External references for this mRNA
DatabaseAccession
GeneID18613988
GenbankXM_007051501.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g028800Tc01v2_g028800Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p028800.1Tc01v2_p028800.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto65044auto65044Theobroma cacaoexon
exon-auto65045auto65045Theobroma cacaoexon
exon-auto65046auto65046Theobroma cacaoexon
exon-auto65047auto65047Theobroma cacaoexon
exon-auto65048auto65048Theobroma cacaoexon
exon-auto65049auto65049Theobroma cacaoexon
exon-auto65050auto65050Theobroma cacaoexon
exon-auto65051auto65051Theobroma cacaoexon
exon-auto65052auto65052Theobroma cacaoexon
exon-auto65053auto65053Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto65054auto65054Theobroma cacaoCDS
CDS-auto65055auto65055Theobroma cacaoCDS
CDS-auto65056auto65056Theobroma cacaoCDS
CDS-auto65057auto65057Theobroma cacaoCDS
CDS-auto65058auto65058Theobroma cacaoCDS
CDS-auto65059auto65059Theobroma cacaoCDS
CDS-auto65060auto65060Theobroma cacaoCDS
CDS-auto65061auto65061Theobroma cacaoCDS
CDS-auto65062auto65062Theobroma cacaoCDS
CDS-auto65063auto65063Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t028800.1 ID=Tc01v2_t028800.1|Name=Tc01v2_t028800.1|organism=Theobroma cacao|type=mRNA|length=1557bp
ATGAAGAAAGAAGATATACCCGATAAAGGTCGGAGTTTCCCGGAGGATCC
GAATCTCCCTAAATGGGTCTGCCAGAACTGTCACAACTCCCTTTGCATGG
TCGGCGTCGATTCATACGTCGACAAGTTCCCAAACGACTCCTCTCGCTCC
GCAATGCAGGGGTCTTTAACTCATGGAGCTAGCAGTGTGCTGGGTTCAAC
TCGTATGGACAACTCTTTTGTTGTGCTGCCAAAGCAAAAGCCCCAAGCAC
AAGGGATCCCTCCCCGTCCTCGTGGTGGGCCTGGACAGCCTGATGCTGGC
CACCCTGGGAAGGCTATGGAAGAATCATTTGTGGTGGTGTATAAGTCGGA
GTCTGCTTCTGATGGAGGTGGGGCACATTTACCATTGTCAGAAGGTGGAC
CAAACAGTCCTTTGCAGCCGAACAACTCTGGATTTCACTCGACTATTACT
GTCCTGAAACGTGCATTTGAGATTGCCACGACTCAGACACAGGTTGAGCA
ACCATTATGCCTTGAATGCATGAGGGTGTTGTCTGACAAACTTGACAAGG
AGGTTGGGGATGTGACTAGGGACATTGAAGCATATGAAGCCTGTCTTCAG
CGCTTGGAGGGGGAGCCGCAAGAAATTCTCAGTGAGGCTGATTTTCGTAA
GGAGAAATTAAAGATTGAGGAAGAAGAAAGAAAACTTGAAGCAGCAATTG
AAGAAATAGAAAAACAGAATGCCGTAGTAAATGCTGAACTAAAAGAATTA
GAGCAAAAATCAAACCGTGTCAAAGAATTGGAGGAGAGGTATTGGCAGGA
GTTTAACAACTTTCAGTTTCAATTAATTGCACATCAGGAAGAGAGAGATG
CAATTTTGGCGAAGACTGAAGTTTCACAAGCACATTTAGAGTTGTTAAAG
CGAACTAACGTGCTCAATGATGCTTTCCCAATCTGGCATGATGGAGAATT
TGGAACTATAAACAATTTTCGTCTTGGACGACTGCCTAAAATTCCAGTTG
AGTGGGATGAAATAAATGCTGCCTGGGGCCAAGCTTGCCTCCTTCTTCAT
ACAATGTGTCAATACTTCTGGCCAAAGTTTCACTATCGGATAAAAATAAT
TCCCATGGGAAGCTACCCTCGGATAAAGGACAGCAACAACAATACATATG
AGTTGTTTGGTCCAGTGAACTTGTTCTGGAGTACAAGGTATGACAAAGCA
ATGACACTATTCTTGACATGCCTTAAGGACTTTGCTGAGTTTGCAAATTC
CAAGGATCAAGAAAACAACATTCCACCTGAGAAACGCTTCAACTTGCCCT
ATAAGATCGAGAATGACAGAGTGGAAAACTACTCCATCACACAAAGCTTC
AATAAGCAAGAGAATTGGACCAAAGCTCTGAAGTATACCCTCTGCAATCT
GAAGTGGGCTCTCTACTGGTTTATTGGAAGCACCAATTTCCAGCCCCTGT
CTGCCATAGTTTCTTCGGCTACTGAAGTTTCAGCTGCGGGCTCTTTATAT
GCAAAACGTGGTCCTGATCCCAAATATGTAGCTCGAAAGCCATCAAATTC
AAGATAG
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protein sequence of Tc01v2_p028800.1

>Tc01v2_p028800.1 ID=Tc01v2_p028800.1|Name=Tc01v2_p028800.1|organism=Theobroma cacao|type=polypeptide|length=519bp
MKKEDIPDKGRSFPEDPNLPKWVCQNCHNSLCMVGVDSYVDKFPNDSSRS
AMQGSLTHGASSVLGSTRMDNSFVVLPKQKPQAQGIPPRPRGGPGQPDAG
HPGKAMEESFVVVYKSESASDGGGAHLPLSEGGPNSPLQPNNSGFHSTIT
VLKRAFEIATTQTQVEQPLCLECMRVLSDKLDKEVGDVTRDIEAYEACLQ
RLEGEPQEILSEADFRKEKLKIEEEERKLEAAIEEIEKQNAVVNAELKEL
EQKSNRVKELEERYWQEFNNFQFQLIAHQEERDAILAKTEVSQAHLELLK
RTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLH
TMCQYFWPKFHYRIKIIPMGSYPRIKDSNNNTYELFGPVNLFWSTRYDKA
MTLFLTCLKDFAEFANSKDQENNIPPEKRFNLPYKIENDRVENYSITQSF
NKQENWTKALKYTLCNLKWALYWFIGSTNFQPLSAIVSSATEVSAAGSLY
AKRGPDPKYVARKPSNSR*
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