Tc01v2_t027480.2

Overview
NameTc01v2_t027480.2
Unique NameTc01v2_t027480.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1116
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
Productmannan endo-1,4-beta-mannosidase 4, transcript variant X2
NoteMannan endo-1,4-beta-mannosidase 4
Cross References
External references for this mRNA
DatabaseAccession
GeneID18613841
GenbankXM_018114138.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g027480Tc01v2_g027480Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p027480.2Tc01v2_p027480.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto62335auto62335Theobroma cacaoexon
exon-auto62336auto62336Theobroma cacaoexon
exon-auto62337auto62337Theobroma cacaoexon
exon-auto62338auto62338Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto62339auto62339Theobroma cacaoCDS
CDS-auto62340auto62340Theobroma cacaoCDS
CDS-auto62341auto62341Theobroma cacaoCDS
CDS-auto62342auto62342Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t027480.2 ID=Tc01v2_t027480.2|Name=Tc01v2_t027480.2|organism=Theobroma cacao|type=mRNA|length=1116bp
ATGAAGGGAAATCGTTCCTTCAACAGCTTTCTCCTGTTAGTTTTGACGGT
GATGATGATCTTCCACCGTGAAATTTGCCATGCTCGGCCTGACCTTGGCG
GCAGTACATTTTCCTTCGTTCAAACAAGAGGAACCAACTTTGTCATGAAT
GGAAAGCCGTTTTACCTGAATGGCTTCAATGCTTATTGGATGATGATGTT
TGCATCTGACCCTTCTACAAGGATCAAGGTCACAGACACTTTTCGAGAAG
CCTCAAAGTATGGCATGAATGTAGCAAGAGTTTGGGCTTTCAACGATGGT
GATTACAAGCCCCTTCAGAATTCTCCTGGTTCTTACAATGAGGACGTGTT
CAAGGGACTGGACTTTGTTGTAGCTGAAGCTAAGAAGTATGGGATTCACT
TGATTCTGAGTTTGGTGAATAACTTCAAAGATTTCGGAGGAAAAGATAAG
TATGTTCAATGGGCAAAGCAACAAGGTCAGAGCCTGAGCAATGAAGATGA
TTTTTATACAAACTCTCTCGTCAAACAATACTACAAGAATCATGTTAAGA
ACTGGTTAAAAGAAATGGCTGCACATGTCAAGAGCATTGATAATCATCAT
CTACTGGAAATAGGTCTTGAAGGATTTTATGGGGAATCGATGCCAGAGAA
GAAACAATACAATCCAAATAGCTCTCCTATTGGGACTGATTTCATTTCTA
ATAATCAGATCCCCGACGTCGATTTTGCTACTATTCATCTGTACCCTGAA
CAATGGTTACCATCAACAAATTCAAGCGAAGAGGCCCAGCTTGCTTTTGT
AGACAAATGGATCCAAGCCCATATCCTGGACTGTAATTCACTACTGAGAA
AACCACTTCTGATAGGAGAGTTCGGCAAGTCTTTCAAGTTGCCTGGATAC
AGCTTGGAAAAGAGAAACTACTATTTCCAAAAGATTTACGGTGCTATCTA
CAACAGTGCTAGAAGTGGGGGGTCATGTGCTGGTGGGCTCTTTTGGCAAC
TCTTCAGCCTTGGAATGGATAACATGGGAGATGGCTATCAAGTTGTTTTG
GAACAGAGCCCTTCTACTGCTCATGTCATTGCTCAGCAGTCTCAGAAGCT
ATCATCTCTCACTTGA
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protein sequence of Tc01v2_p027480.2

>Tc01v2_p027480.2 ID=Tc01v2_p027480.2|Name=Tc01v2_p027480.2|organism=Theobroma cacao|type=polypeptide|length=372bp
MKGNRSFNSFLLLVLTVMMIFHREICHARPDLGGSTFSFVQTRGTNFVMN
GKPFYLNGFNAYWMMMFASDPSTRIKVTDTFREASKYGMNVARVWAFNDG
DYKPLQNSPGSYNEDVFKGLDFVVAEAKKYGIHLILSLVNNFKDFGGKDK
YVQWAKQQGQSLSNEDDFYTNSLVKQYYKNHVKNWLKEMAAHVKSIDNHH
LLEIGLEGFYGESMPEKKQYNPNSSPIGTDFISNNQIPDVDFATIHLYPE
QWLPSTNSSEEAQLAFVDKWIQAHILDCNSLLRKPLLIGEFGKSFKLPGY
SLEKRNYYFQKIYGAIYNSARSGGSCAGGLFWQLFSLGMDNMGDGYQVVL
EQSPSTAHVIAQQSQKLSSLT*
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