Tc01v2_t027480.1

Overview
NameTc01v2_t027480.1
Unique NameTc01v2_t027480.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1239
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 31 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
Productmannan endo-1,4-beta-mannosidase 4, transcript variant X1
NoteMannan endo-1,4-beta-mannosidase 4
Cross References
External references for this mRNA
DatabaseAccession
GeneID18613841
GenbankXM_007051279.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g027480Tc01v2_g027480Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p027480.1Tc01v2_p027480.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto62323auto62323Theobroma cacaoexon
exon-auto62324auto62324Theobroma cacaoexon
exon-auto62325auto62325Theobroma cacaoexon
exon-auto62326auto62326Theobroma cacaoexon
exon-auto62327auto62327Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto62328auto62328Theobroma cacaoCDS
CDS-auto62329auto62329Theobroma cacaoCDS
CDS-auto62330auto62330Theobroma cacaoCDS
CDS-auto62331auto62331Theobroma cacaoCDS
CDS-auto62332auto62332Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t027480.1 ID=Tc01v2_t027480.1|Name=Tc01v2_t027480.1|organism=Theobroma cacao|type=mRNA|length=1239bp
ATGAAGGGAAATCGTTCCTTCAACAGCTTTCTCCTGTTAGTTTTGACGGT
GATGATGATCTTCCACCGTGAAATTTGCCATGCTCGGCCTGACCTTGGCG
GCAGTACATTTTCCTTCGTTCAAACAAGAGGAACCAACTTTGTCATGAAT
GGAAAGCCGTTTTACCTGAATGGCTTCAATGCTTATTGGATGATGATGTT
TGCATCTGACCCTTCTACAAGGATCAAGGTCACAGACACTTTTCGAGAAG
CCTCAAAGTATGGCATGAATGTAGCAAGAGTTTGGGCTTTCAACGATGGT
GATTACAAGCCCCTTCAGAATTCTCCTGGTTCTTACAATGAGGACGTGTT
CAAGGGACTGGACTTTGTTGTAGCTGAAGCTAAGAAGTATGGGATTCACT
TGATTCTGAGTTTGGTGAATAACTTCAAAGATTTCGGAGGAAAAGATAAG
TATGTTCAATGGGCAAAGCAACAAGGTCAGAGCCTGAGCAATGAAGATGA
TTTTTATACAAACTCTCTCGTCAAACAATACTACAAGAATCATGTTAAGG
CAGTGCTCACGAGAATCAACACGATTACCGGGGTGGCATATAAAGACGAT
CCTACAATTTTTGCTTGGGAACTCATGAATGAACCCCGTTGCCCTAGTGA
CCCTTCTGGAGCTAACCTTCAGAACTGGTTAAAAGAAATGGCTGCACATG
TCAAGAGCATTGATAATCATCATCTACTGGAAATAGGTCTTGAAGGATTT
TATGGGGAATCGATGCCAGAGAAGAAACAATACAATCCAAATAGCTCTCC
TATTGGGACTGATTTCATTTCTAATAATCAGATCCCCGACGTCGATTTTG
CTACTATTCATCTGTACCCTGAACAATGGTTACCATCAACAAATTCAAGC
GAAGAGGCCCAGCTTGCTTTTGTAGACAAATGGATCCAAGCCCATATCCT
GGACTGTAATTCACTACTGAGAAAACCACTTCTGATAGGAGAGTTCGGCA
AGTCTTTCAAGTTGCCTGGATACAGCTTGGAAAAGAGAAACTACTATTTC
CAAAAGATTTACGGTGCTATCTACAACAGTGCTAGAAGTGGGGGGTCATG
TGCTGGTGGGCTCTTTTGGCAACTCTTCAGCCTTGGAATGGATAACATGG
GAGATGGCTATCAAGTTGTTTTGGAACAGAGCCCTTCTACTGCTCATGTC
ATTGCTCAGCAGTCTCAGAAGCTATCATCTCTCACTTGA
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protein sequence of Tc01v2_p027480.1

>Tc01v2_p027480.1 ID=Tc01v2_p027480.1|Name=Tc01v2_p027480.1|organism=Theobroma cacao|type=polypeptide|length=413bp
MKGNRSFNSFLLLVLTVMMIFHREICHARPDLGGSTFSFVQTRGTNFVMN
GKPFYLNGFNAYWMMMFASDPSTRIKVTDTFREASKYGMNVARVWAFNDG
DYKPLQNSPGSYNEDVFKGLDFVVAEAKKYGIHLILSLVNNFKDFGGKDK
YVQWAKQQGQSLSNEDDFYTNSLVKQYYKNHVKAVLTRINTITGVAYKDD
PTIFAWELMNEPRCPSDPSGANLQNWLKEMAAHVKSIDNHHLLEIGLEGF
YGESMPEKKQYNPNSSPIGTDFISNNQIPDVDFATIHLYPEQWLPSTNSS
EEAQLAFVDKWIQAHILDCNSLLRKPLLIGEFGKSFKLPGYSLEKRNYYF
QKIYGAIYNSARSGGSCAGGLFWQLFSLGMDNMGDGYQVVLEQSPSTAHV
IAQQSQKLSSLT*
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