Tc01v2_t027390.2

Overview
NameTc01v2_t027390.2
Unique NameTc01v2_t027390.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length861
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 20 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
Productuncharacterized protein C24B11.05, transcript variant X4
NoteHaloacid dehalogenase-like hydrolase superfamily protein
Cross References
External references for this mRNA
DatabaseAccession
GeneID18613830
GenbankXM_018113824.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g027390Tc01v2_g027390Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p027390.2Tc01v2_p027390.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto62125auto62125Theobroma cacaoexon
exon-auto62126auto62126Theobroma cacaoexon
exon-auto62127auto62127Theobroma cacaoexon
exon-auto62128auto62128Theobroma cacaoexon
exon-auto62129auto62129Theobroma cacaoexon
exon-auto62130auto62130Theobroma cacaoexon
exon-auto62131auto62131Theobroma cacaoexon
exon-auto62132auto62132Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto62133auto62133Theobroma cacaoCDS
CDS-auto62134auto62134Theobroma cacaoCDS
CDS-auto62135auto62135Theobroma cacaoCDS
CDS-auto62136auto62136Theobroma cacaoCDS
CDS-auto62137auto62137Theobroma cacaoCDS
CDS-auto62138auto62138Theobroma cacaoCDS
CDS-auto62139auto62139Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t027390.2 ID=Tc01v2_t027390.2|Name=Tc01v2_t027390.2|organism=Theobroma cacao|type=mRNA|length=861bp
ATGAAGATGGACGCTGTTGGGAGAGCCACTGGAACTAAATATGAATGCTT
GCTCTTTGACATGGATGATACTCTATACCCCTTAAGCACAGGTGTCAACT
TGGCTTGCCGCAAGAACATAGAAGAATTTATGCTGCAATACGTGAATATT
GAAGAAAGTGAAGTACCAAGAATGTGCTTGGAATTATACAGGGAATATGG
AACAACAATGGCTGGTTTAAAGGCTCTTGGTTATGAATTTGACAACGACG
AGTTTCACGCGTATGTTCATGGAAGATTGCCATACGAAACACTGAGGCCT
GATCCGGTGTTAAGAAACCTTCTGCTTTCCATGCCCCAGCGGAAAATAAT
CTTCACGAATGCTGATAAGGCACATGCAAGTCAAGTTCTTAAAAGGTTGG
GCTTGGAAGATTGCTTTGAAGGAATCATCTGCTTTGAAACTCTTAACCCT
CCTCTTGAACCAGCTGATTTCATGGATGCGCTGGATGATAATCAAGTTCT
GGCAGGAGCAGACCTAGAGCCCAACACCGCTGACAGAACTGATGCCAGCT
GTGTCAATTCCAACTCACCAATTCTCTGTAAACCCTCACTGGAAGCTTTT
GAAGCTGCCATTCGGATTGCGAATGTCAATCCAAAGAAAACGATTTTCTT
TGATGATAGTGCTCGAAACATCGGGAGTGGAAAAGCAGCAGGGCTTCACA
CAGTTATAGTGGGGAGCTCGGTACTGGTGCCTGGTGCAGACTATGCCTTG
AGTAGCATCCACAATATCAAAGAAGCAATACCTGAGATATGCGAAGGTGA
AGAGGAGCAGATGGAGCAAGTTATCCAATCTGCTGCAGTTGAAACTGTCG
TCCTTGCATAG
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protein sequence of Tc01v2_p027390.2

>Tc01v2_p027390.2 ID=Tc01v2_p027390.2|Name=Tc01v2_p027390.2|organism=Theobroma cacao|type=polypeptide|length=287bp
MKMDAVGRATGTKYECLLFDMDDTLYPLSTGVNLACRKNIEEFMLQYVNI
EESEVPRMCLELYREYGTTMAGLKALGYEFDNDEFHAYVHGRLPYETLRP
DPVLRNLLLSMPQRKIIFTNADKAHASQVLKRLGLEDCFEGIICFETLNP
PLEPADFMDALDDNQVLAGADLEPNTADRTDASCVNSNSPILCKPSLEAF
EAAIRIANVNPKKTIFFDDSARNIGSGKAAGLHTVIVGSSVLVPGADYAL
SSIHNIKEAIPEICEGEEEQMEQVIQSAAVETVVLA*
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