Tc01v2_t027370.4

Overview
NameTc01v2_t027370.4
Unique NameTc01v2_t027370.4
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1251
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 44 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productpectin acetylesterase 6, transcript variant X4
NotePectin acetylesterase 6
Cross References
External references for this mRNA
DatabaseAccession
GeneID18613828
GenbankXM_018128055.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g027370Tc01v2_g027370Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p027370.4Tc01v2_p027370.4Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto62062auto62062Theobroma cacaoexon
exon-auto62063auto62063Theobroma cacaoexon
exon-auto62064auto62064Theobroma cacaoexon
exon-auto62065auto62065Theobroma cacaoexon
exon-auto62066auto62066Theobroma cacaoexon
exon-auto62067auto62067Theobroma cacaoexon
exon-auto62068auto62068Theobroma cacaoexon
exon-auto62069auto62069Theobroma cacaoexon
exon-auto62070auto62070Theobroma cacaoexon
exon-auto62071auto62071Theobroma cacaoexon
exon-auto62072auto62072Theobroma cacaoexon
exon-auto62073auto62073Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto62074auto62074Theobroma cacaoCDS
CDS-auto62075auto62075Theobroma cacaoCDS
CDS-auto62076auto62076Theobroma cacaoCDS
CDS-auto62077auto62077Theobroma cacaoCDS
CDS-auto62078auto62078Theobroma cacaoCDS
CDS-auto62079auto62079Theobroma cacaoCDS
CDS-auto62080auto62080Theobroma cacaoCDS
CDS-auto62081auto62081Theobroma cacaoCDS
CDS-auto62082auto62082Theobroma cacaoCDS
CDS-auto62083auto62083Theobroma cacaoCDS
CDS-auto62084auto62084Theobroma cacaoCDS
CDS-auto62085auto62085Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t027370.4 ID=Tc01v2_t027370.4|Name=Tc01v2_t027370.4|organism=Theobroma cacao|type=mRNA|length=1251bp
ATGAATCGGGTTTCGATATGGGTTTTGAGTCTGTGTTGTGTAGTTGGAAT
TGGTTTGAGCCGATCTGAAGATGCGGTTGAAGAATTGAAAGCTAAAGAGA
GTCTGCTTTCGTACTTGGAGAAAGATGCAGCGTCCCCTGGCGCCAACACT
CTCATGGTTCCCCTCACTCTCATTCAAGGAGCTGCTTCTAAAGGAGCTGT
TTGTTTGGATGGGACGCCTCCTGGTTATCATCTGGATCGTGGGTTCGGTT
CAGGTTCAAACGGCTGGCTCATTCATTTGGAGGGAGGTGGATGGTGTAAT
AACATTCGAACTTGTGTCTTCCGTAAAACTACTCGACGTGGTTCATCAAA
ATTTATGGCGAAGCAAACAAATTTCACCGGAATATTGAGCAATAAAGCTG
AAGAAAATCCTGATTTCTACAACTGGAACAGAGTGAAGCTACGGTACTGC
GATGGGGCATCGTTTGCTGGGGAGGGCCAGAATGAGGCTAACCAACTTTA
TTTTAGAGGACAAAGGATCTGGTCAGCTGCTATGGAAGAATTAATGGCCA
AGGGAATGCAGAATGCTGAGCAGGCTCTTCTTTCTGGATGCTCAGCTGGG
GGTCTAGCATCCATTCTACACTGTGATGAATTTAAGGATTTGTTTCCAAA
AACCACCAAAGTGAAATGTCTAAGCGATGCGGGAATGTTCCTTGATGCAA
CTAATGTGGCTGGTGGCCATTCATTAAGGGATATGTATGGGGGTGTGGTT
ACCTTACAGGGTGTGCAAAAGAATCTGCCAAACACTTGTACCAGTCAAAT
GGATCCAACTTCGTGCTTCTTCCCTCAAAACTTGGTTGCAAATATCAGGA
CTCCTTTGTTTCTTCTCAATGCAGCCTATGATGCATGGCAGGTCCAAGAG
AGTTTAATTCCATCATCTGCTGATCCTCATGGCTCCTGGCGTGAGTGCAA
AATGGATCGTTCCCATTGTAACTCAACACAAATGCAGTTTCTGCAAGACT
TCAGGAGTCAAATGCTCAACGCCATAAATGTTTTCTCAAAGTCCAATCAA
AATGGTTTATTCATAAATTCTTGTTTTGCTCACTGCCAGTCAGAGAGGCA
GGATACATGGTATGAGAATGATTCTCCCCGTATTGGAAACAAGGCAGTTG
CAGTGTCTGTTGGAGACTGGTTCTTTGATCGAACAGCTGTTAAAGCTATT
GACTGTGCATACCCATGTGACAGTACTTGTCACGATCTTGTCTTCAAGTG
A
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protein sequence of Tc01v2_p027370.4

>Tc01v2_p027370.4 ID=Tc01v2_p027370.4|Name=Tc01v2_p027370.4|organism=Theobroma cacao|type=polypeptide|length=417bp
MNRVSIWVLSLCCVVGIGLSRSEDAVEELKAKESLLSYLEKDAASPGANT
LMVPLTLIQGAASKGAVCLDGTPPGYHLDRGFGSGSNGWLIHLEGGGWCN
NIRTCVFRKTTRRGSSKFMAKQTNFTGILSNKAEENPDFYNWNRVKLRYC
DGASFAGEGQNEANQLYFRGQRIWSAAMEELMAKGMQNAEQALLSGCSAG
GLASILHCDEFKDLFPKTTKVKCLSDAGMFLDATNVAGGHSLRDMYGGVV
TLQGVQKNLPNTCTSQMDPTSCFFPQNLVANIRTPLFLLNAAYDAWQVQE
SLIPSSADPHGSWRECKMDRSHCNSTQMQFLQDFRSQMLNAINVFSKSNQ
NGLFINSCFAHCQSERQDTWYENDSPRIGNKAVAVSVGDWFFDRTAVKAI
DCAYPCDSTCHDLVFK*
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