Tc01v2_t027190.1

Overview
NameTc01v2_t027190.1
Unique NameTc01v2_t027190.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1524
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 10 ESTs, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productproline--tRNA ligase, cytoplasmic
NoteProline--tRNA ligase, cytoplasmic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18613809
GenbankXM_007051234.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g027190Tc01v2_g027190Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p027190.1Tc01v2_p027190.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto61640auto61640Theobroma cacaoexon
exon-auto61641auto61641Theobroma cacaoexon
exon-auto61642auto61642Theobroma cacaoexon
exon-auto61643auto61643Theobroma cacaoexon
exon-auto61644auto61644Theobroma cacaoexon
exon-auto61645auto61645Theobroma cacaoexon
exon-auto61646auto61646Theobroma cacaoexon
exon-auto61647auto61647Theobroma cacaoexon
exon-auto61648auto61648Theobroma cacaoexon
exon-auto61649auto61649Theobroma cacaoexon
exon-auto61650auto61650Theobroma cacaoexon
exon-auto61651auto61651Theobroma cacaoexon
exon-auto61652auto61652Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto61653auto61653Theobroma cacaoCDS
CDS-auto61654auto61654Theobroma cacaoCDS
CDS-auto61655auto61655Theobroma cacaoCDS
CDS-auto61656auto61656Theobroma cacaoCDS
CDS-auto61657auto61657Theobroma cacaoCDS
CDS-auto61658auto61658Theobroma cacaoCDS
CDS-auto61659auto61659Theobroma cacaoCDS
CDS-auto61660auto61660Theobroma cacaoCDS
CDS-auto61661auto61661Theobroma cacaoCDS
CDS-auto61662auto61662Theobroma cacaoCDS
CDS-auto61663auto61663Theobroma cacaoCDS
CDS-auto61664auto61664Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t027190.1 ID=Tc01v2_t027190.1|Name=Tc01v2_t027190.1|organism=Theobroma cacao|type=mRNA|length=1524bp
ATGGCTGGACGGGAGCAGAAAAAGTCTGGCGGTGGAGGGAAAAAGAAGGA
AGTGAAGAAGGAGACTGGCTTGGGTCTCTCCTTCACTAAGGATGAGAATT
TCGGGGAATGGTACTCTGAGGTTGTCGTCAATGGTGAAATGATTGAGTAC
TATGACATTTCTGGCTGTTATATTCTGAGGCCATGGGCAATTTCAATTTG
GGAGAACATGCAAACATTCTTTGATGCAGAAATCAAGAAAATGAAAGTCA
AGAACTGCTATTTCCCTCTCTTTGTATCTCCTGGTGTTTTGCAAAAGGAG
AAGGATCACGTTGAGGGTTTTGCTCCAGAGGTTGCTTGGGTGACCAAATC
TGGGGAGTCTGACTTGGAGGTGCCAATTGCAATCCGCCCAACTAGTGAGA
CAGTTATGTATCCCTACTATTCTAAGTGGATAAGAGGCCACCGTGACTTG
CCTTTGAAACTTAACCAGTGGTGCAATGTTGTTCGATGGGAATTTAGCCA
TCCCACACCATTTATCAGGAGTCGTGAATTTCTCTGGCAGGAAGGGCATA
CTGCCTTTTCAACAAAGGAAGAGGCAGACACAGAGGTTCTTCAAATATTG
GAACTGTACCGACGTATATATGAAGAATTCTTGGCTATTCCTGTTATAAA
AGGCAGGAAGAGTGAATTGGAGAAGTTTGCTGGTGGACTTTACACAACTA
GTGTTGAGGCATTTATTCCAAATACCGGGCGTGGTATTCAAGGTGCAACG
TCCCATTGTTTGGGCCAAAATTTTGCAAAAATGTTTGAGATAAACTTTGA
AAATGAAAAGGGTGAGAAGGCTATGGTCTGGCAGAATTCCTGGGCGTATA
GTACACGAACGATTGGGGTAATGGTGATGGTTCATGGGGATGATAAAGGC
TTGGTGCTACCTCCAAAAGTAGCAGCTGTGCAAGTTATTGTGATTCCTGT
GCCTTACAAGGATGCAGATACTCAAGGTATTTTTGATGCCTGTGTTGCCA
CTGTGGCAACCCTGACAGAAGCTGGTATTCTTGCTGAAGCTGATCTTAGA
GATAACTACTCACCTGGTTGGAAGTACTCAGACTGGGAGATGAAAGGTGT
TCCCCTAAGGATTGAAATAGGGCCCAGAGACTTGACAAATAATCAGGTGC
GTGCAGTTCGCCGTGACAATGGAGCAAAAACTGATATCTCTAGAGTATTT
TTGGTCGAACAAGTAAAAGGAATGTTGGATAAGATTCAACAGAACCTGTT
TGACGTTGCAAAACAAAAGCGAGATGCCTGTGTTGAAGTTGTAAAAACTT
GGGAAGAGTTTGTAACAGCTCTTGGTCAGAAGAAAATGATCTTAGCTCCT
TGGTGTGATGAGGAGGATGTGGAGAAAGATGTGAAAGCACGAACAAAGGG
TGAGATGGGAGCAGCCAAGTCTCTTTGTACCCCATTTGAGCAGCCTGAAC
TCCCAGAAGGTACTAAATGCTTTGCTTCTGGGAAGCCTGCAAAGAAGTGG
ACCTATTGGGGCAGAAGTTACTAA
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protein sequence of Tc01v2_p027190.1

>Tc01v2_p027190.1 ID=Tc01v2_p027190.1|Name=Tc01v2_p027190.1|organism=Theobroma cacao|type=polypeptide|length=508bp
MAGREQKKSGGGGKKKEVKKETGLGLSFTKDENFGEWYSEVVVNGEMIEY
YDISGCYILRPWAISIWENMQTFFDAEIKKMKVKNCYFPLFVSPGVLQKE
KDHVEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDL
PLKLNQWCNVVRWEFSHPTPFIRSREFLWQEGHTAFSTKEEADTEVLQIL
ELYRRIYEEFLAIPVIKGRKSELEKFAGGLYTTSVEAFIPNTGRGIQGAT
SHCLGQNFAKMFEINFENEKGEKAMVWQNSWAYSTRTIGVMVMVHGDDKG
LVLPPKVAAVQVIVIPVPYKDADTQGIFDACVATVATLTEAGILAEADLR
DNYSPGWKYSDWEMKGVPLRIEIGPRDLTNNQVRAVRRDNGAKTDISRVF
LVEQVKGMLDKIQQNLFDVAKQKRDACVEVVKTWEEFVTALGQKKMILAP
WCDEEDVEKDVKARTKGEMGAAKSLCTPFEQPELPEGTKCFASGKPAKKW
TYWGRSY*
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