Tc01v2_t026760.1

Overview
NameTc01v2_t026760.1
Unique NameTc01v2_t026760.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1230
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 8 ESTs, 72 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productshaggy-related protein kinase alpha
NoteGlycogen synthase kinase-3 homolog MsK-3
Cross References
External references for this mRNA
DatabaseAccession
GeneID18613769
GenbankXM_007051165.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g026760Tc01v2_g026760Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p026760.1Tc01v2_p026760.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto60429auto60429Theobroma cacaoexon
exon-auto60430auto60430Theobroma cacaoexon
exon-auto60431auto60431Theobroma cacaoexon
exon-auto60432auto60432Theobroma cacaoexon
exon-auto60433auto60433Theobroma cacaoexon
exon-auto60434auto60434Theobroma cacaoexon
exon-auto60435auto60435Theobroma cacaoexon
exon-auto60436auto60436Theobroma cacaoexon
exon-auto60437auto60437Theobroma cacaoexon
exon-auto60438auto60438Theobroma cacaoexon
exon-auto60439auto60439Theobroma cacaoexon
exon-auto60440auto60440Theobroma cacaoexon
exon-auto60441auto60441Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto60442auto60442Theobroma cacaoCDS
CDS-auto60443auto60443Theobroma cacaoCDS
CDS-auto60444auto60444Theobroma cacaoCDS
CDS-auto60445auto60445Theobroma cacaoCDS
CDS-auto60446auto60446Theobroma cacaoCDS
CDS-auto60447auto60447Theobroma cacaoCDS
CDS-auto60448auto60448Theobroma cacaoCDS
CDS-auto60449auto60449Theobroma cacaoCDS
CDS-auto60450auto60450Theobroma cacaoCDS
CDS-auto60451auto60451Theobroma cacaoCDS
CDS-auto60452auto60452Theobroma cacaoCDS
CDS-auto60453auto60453Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t026760.1 ID=Tc01v2_t026760.1|Name=Tc01v2_t026760.1|organism=Theobroma cacao|type=mRNA|length=1230bp
ATGGCTTCAGTAAGTATAGTTCCTACTTCTGGATTAAGAGAACCTAGTGG
AAATACAGTCGGTGTCGATAGGTTGCCTGATGAAATGAATGACATGAAAA
TTAGGGATGACAAGGAAGTGGAAGCAACTATAGTTGATGGTAATGGAACC
GAGACAGGGCATATAATTGTTACCACTATTGGTGGTAAAAATGGCCAGCC
TAAGCAGACAATAAGCTATATGGCTGAACGTGTTGTTGGACATGGATCAT
TTGGAGTAGTCTTCCAGGCTAAATGCTTAGAGACAGGTGAAACTGTTGCT
ATTAAAAAGGTTCTTCAAGACAAGAGATATAAGAACCGTGAACTGCAAAC
CATGCGTCTGCTAGACCACCCAAATGTTGTCTGCCTGAAGCACTGTTTCT
TTTCAACAACTGAAAAAGATGAGCTCTATCTTAACCTGGTGCTTGAGTAT
GTTCCAGAAACTGTCCATCGGGTTATCAAACATTATAATAAGATGAACCA
AAGGATGCCACTGATATATGTTAAACTCTATTTTTACCAGATTTGCAGAG
CACTTGCTTACATTCATAACAGCATTGGTGTGTGCCACAGGGACATAAAG
CCTCAAAATTTATTGGTCAACCCACATACCCACCAGCTAAAACTGTGTGA
TTTTGGAAGTGCAAAAGTTTTGGTAAAAGGGGAACCCAATATATCCTACA
TCTGTTCTAGGTACTATCGAGCACCTGAATTAATATTTGGTGCAACCGAA
TATACTACAGCCATTGACATCTGGTCTGCTGGTTGTGTTTTGGCTGAACT
ATTGCTTGGACAGCCTCTATTTCCTGGTGAGAGTGGAGTAGATCAGCTCG
TTGAAATTATTAAGGTTCTAGGTACCCCAACAAGAGAAGAAATAAAGTGC
ATGAATCCTAACTATACAGAGTTTAAATTTCCTCAAATTAAAGCTCACCC
ATGGCACAAGATATTTCATAAGCGTATGCCCCCAGAAGCTGTAGATCTTG
TTTCTCGGTTATTGCAGTACTCTCCAAACCTTCGTAGCACAGCTATTGAG
GCTTTGATTCATCCGTTCTTTGATGAGCTACGTGATCCTAACACCCGTCT
ACCTAATGGACGTTTTCTTCCCCCTCTATTCAACTTTAAGCCTCACGAAC
TGAAGGGAGTGCCTGTGGATATAATAGTGAAGCTGATTCCAGAGCATGCA
AGAAAACAATGTGCCTTCCTGGGGTTGTGA
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protein sequence of Tc01v2_p026760.1

>Tc01v2_p026760.1 ID=Tc01v2_p026760.1|Name=Tc01v2_p026760.1|organism=Theobroma cacao|type=polypeptide|length=410bp
MASVSIVPTSGLREPSGNTVGVDRLPDEMNDMKIRDDKEVEATIVDGNGT
ETGHIIVTTIGGKNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVA
IKKVLQDKRYKNRELQTMRLLDHPNVVCLKHCFFSTTEKDELYLNLVLEY
VPETVHRVIKHYNKMNQRMPLIYVKLYFYQICRALAYIHNSIGVCHRDIK
PQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATE
YTTAIDIWSAGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKC
MNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRSTAIE
ALIHPFFDELRDPNTRLPNGRFLPPLFNFKPHELKGVPVDIIVKLIPEHA
RKQCAFLGL*
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