Tc01v2_t025570.1

Overview
NameTc01v2_t025570.1
Unique NameTc01v2_t025570.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1491
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productfumarate hydratase 1, mitochondrial
NoteFumarate hydratase 1, mitochondrial
Cross References
External references for this mRNA
DatabaseAccession
GeneID18613624
GenbankXM_007050953.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g025570Tc01v2_g025570Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p025570.1Tc01v2_p025570.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto57150auto57150Theobroma cacaoexon
exon-auto57151auto57151Theobroma cacaoexon
exon-auto57152auto57152Theobroma cacaoexon
exon-auto57153auto57153Theobroma cacaoexon
exon-auto57154auto57154Theobroma cacaoexon
exon-auto57155auto57155Theobroma cacaoexon
exon-auto57156auto57156Theobroma cacaoexon
exon-auto57157auto57157Theobroma cacaoexon
exon-auto57158auto57158Theobroma cacaoexon
exon-auto57159auto57159Theobroma cacaoexon
exon-auto57160auto57160Theobroma cacaoexon
exon-auto57161auto57161Theobroma cacaoexon
exon-auto57162auto57162Theobroma cacaoexon
exon-auto57163auto57163Theobroma cacaoexon
exon-auto57164auto57164Theobroma cacaoexon
exon-auto57165auto57165Theobroma cacaoexon
exon-auto57166auto57166Theobroma cacaoexon
exon-auto57167auto57167Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto57168auto57168Theobroma cacaoCDS
CDS-auto57169auto57169Theobroma cacaoCDS
CDS-auto57170auto57170Theobroma cacaoCDS
CDS-auto57171auto57171Theobroma cacaoCDS
CDS-auto57172auto57172Theobroma cacaoCDS
CDS-auto57173auto57173Theobroma cacaoCDS
CDS-auto57174auto57174Theobroma cacaoCDS
CDS-auto57175auto57175Theobroma cacaoCDS
CDS-auto57176auto57176Theobroma cacaoCDS
CDS-auto57177auto57177Theobroma cacaoCDS
CDS-auto57178auto57178Theobroma cacaoCDS
CDS-auto57179auto57179Theobroma cacaoCDS
CDS-auto57180auto57180Theobroma cacaoCDS
CDS-auto57181auto57181Theobroma cacaoCDS
CDS-auto57182auto57182Theobroma cacaoCDS
CDS-auto57183auto57183Theobroma cacaoCDS
CDS-auto57184auto57184Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t025570.1 ID=Tc01v2_t025570.1|Name=Tc01v2_t025570.1|organism=Theobroma cacao|type=mRNA|length=1491bp
ATGGCGATGTATATCGTATCTCGTCGGCTTTCCGCCGGATCCACCACCTC
CCAGCTGGTCACCTCTCTCCGTTACGCCACTTGCTGGAGGTCCTACTCGA
CGTCGTTTAGGGAGGAACGAGACACTTTCGGCCCCATTAATGTCCCCTCC
GATAAATTGTGGGGAGCGCAAACTCAGAGATCGTTACAGAATTTTGAAAT
AGGCGGCGAGCGTGAACGGATGCCTGAACCTATTATTCGTGCCTTTGGTA
TTCTCAAGAAATGTGCTGCTAAGGTGAATATGGACTATGGTCTTGATCCA
ACCATTGGGAAAGCAATAATGCAAGCGGCCCAAGAAGTAGCTGAAGGGAA
ACTCAATGATCACTTTCCGCTTGTTGTTTGGCAAACTGGCAGTGGCACTC
AGAGTAATATGAATGCCAATGAGGTTATTGCTAATAGAGCAGCTGAGATC
CTTGGGCATAAACGTGGTGACAAATTTGTGCACCCAAATGATCATGTTAA
TAGATCTCAGTCGTCTAATGACACATTCCCAACTGTAATGCACATTGCAG
CTGCAATGGAAATAAACTCAAGATTAACACCTCAGTTGAAGATTTTGCAT
TCCACATTACATTCAAAGTCTATTGAATTCAAAGATATTGTTAAAATTGG
TCGCACTCACACTCAAGATGCAACACCTTTGACTCTTGGGCAAGAGTTTA
GTGGCTATACAACACAAGTCAAGTACGGAATTGATCGGGTTTTGTGCACC
CTGCCACGCATGTATCAGCTTGCACAAGGTGGTACTGCAGTGGGGACAGG
ATTGAATACAAAGAAAGGGTTTGATGAAAAAATGGCAGCTGCAGTAGCTG
ACGAAACACAATTGCCGTTTGTCACTGCAGAAAACAAGTTTGAAGCTTTG
GCTGCACATGATGCCTTTGTTGAAACTAGCGGAGCCCTAAACACTATTGC
TACTTCCCTGATGAAGGTTGCAAATGACATACGATTGCTGGGAAGTGGTC
CCCGATGTGGCCTTGGTGAGCTTATTCTTCCTGAAAATGAGCCAGGCAGC
AGTATTATGCCTGGGAAGGTGAATCCAACCCAGTGTGAGGCTCTTACTAT
GGTGTGTGCCCAGGTTATGGGTAACCATGTGGCTATCACCGTGGGTGGAT
CAAATGGCCACTTTGAATTGAATGTGTTCAAGCCAATGATTGCTAGTGCA
CTCCTACATTCACTGAGATTGCTGGGTGATGCATCTGCTTCCTTTGAGAA
GAACTGTGTGAGGGGAATTCAAGCTAATAGGGAAAGAATTTCAAAATTAC
TTCATGAGTCTCTAATGCTTGTCACATCCTTGAACCCTAAAATTGGTTAT
GATAATGCTGCAGCTGTTGCCAAGAAAGCCCATAAGGAGGGGTCCACTTT
GAAGGAAGCGGCATTGAAACTTGGTGTGCTAACTAGCGAAGAATTTGACA
ATCTTGTGGTGCCTGAGAAAATGATTGGCCCATCTGACTGA
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protein sequence of Tc01v2_p025570.1

>Tc01v2_p025570.1 ID=Tc01v2_p025570.1|Name=Tc01v2_p025570.1|organism=Theobroma cacao|type=polypeptide|length=497bp
MAMYIVSRRLSAGSTTSQLVTSLRYATCWRSYSTSFREERDTFGPINVPS
DKLWGAQTQRSLQNFEIGGERERMPEPIIRAFGILKKCAAKVNMDYGLDP
TIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEI
LGHKRGDKFVHPNDHVNRSQSSNDTFPTVMHIAAAMEINSRLTPQLKILH
STLHSKSIEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVLCT
LPRMYQLAQGGTAVGTGLNTKKGFDEKMAAAVADETQLPFVTAENKFEAL
AAHDAFVETSGALNTIATSLMKVANDIRLLGSGPRCGLGELILPENEPGS
SIMPGKVNPTQCEALTMVCAQVMGNHVAITVGGSNGHFELNVFKPMIASA
LLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGY
DNAAAVAKKAHKEGSTLKEAALKLGVLTSEEFDNLVVPEKMIGPSD*
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