Tc01v2_t025360.1

Overview
NameTc01v2_t025360.1
Unique NameTc01v2_t025360.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1689
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 82 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
Productprobable pectinesterase/pectinesterase inhibitor 7
NoteProbable pectinesterase/pectinesterase inhibitor 7
Cross References
External references for this mRNA
DatabaseAccession
GeneID18613597
GenbankXM_007050920.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g025360Tc01v2_g025360Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p025360.1Tc01v2_p025360.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto56859auto56859Theobroma cacaoexon
exon-auto56860auto56860Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto56861auto56861Theobroma cacaoCDS
CDS-auto56862auto56862Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t025360.1 ID=Tc01v2_t025360.1|Name=Tc01v2_t025360.1|organism=Theobroma cacao|type=mRNA|length=1689bp
ATGGCTTCCAAGCTCTGCTCTCTTCTTGCAATGTCTCTCTTCATTCTTCT
CCCTTTGTTCATCTCTCCTTCTCTTGCAGATGCTCCCCCATCTGATCCTG
TCTCACCAGGAACCATTTGCAAGTCCACCCCAGACCCTTCCTATTGCAGA
TCTGTGCTCCCTAATCAAACCACCAATGTCTACAACTATGGTCGATTCTC
TGTTCGCAAATCTCTGTCACAGTCTCGAAAATTCCTCAAACTAGTTGATA
AGTATCTAACAGAATACCGATCCTCGTTATCAACATCTGCAATTCGTGCT
TTAGAGGATTGCCACTTTCTAGCTGGCCTGAACATGGATTTTCTGTTGAG
CTCCTTCGAAACTGTCAATGCCACTAGTAAAATTCTGTCCCCCGTGGAAG
CTGAGGACATACAAACCTTGCTTAGTGCTATTTTAACTAACCAGCAGACC
TGTTTGGACGGTATACAATCTACTGCTTCAGCTTGGAGCATAAGGAACGG
CCTCGCGGTTCCTATGACAAATGACACAAAACTCTACAGTGTGTCTCTGG
CTCTTTTTACAAAGGGCTGGGTTCCTAAGAGGAAGAAAAAGGCCGCATGG
CAGCCTAGTAGCAAGCAGCTAGCATTCAAACATGGGCGTTTGCTTCTGAA
AATGTCGAGCCGTACACGATCAATTTATGAGACCGTAAGCAGAAGAAAGC
TTCTTCAGACGACTGATGCTGATGAGGTCTTGGTGAGTAACATTGTGACG
GTGAGTCAGGACGGAAGCGGAAATTTCACTACCATTAACGATGCTATATC
TGCAGCTCCCAACAACACCAAAGGTGTAAATGGTTACTTCTTGATTTACA
TCACTGCCGGTGTTTACCAAGAGTACATTTCCATCGCTAAGAACAAAAAA
TACTTGATGATGGTCGGGGATGGTATCAATCAGACAATTATCACCGGAAA
CCGTAGCGTTGTTGATGGGTGGACAACATTTAACTCCGCAACTTTTGCTG
TGGTGGCTCCAAATTTTGTTGCGGTAAACATAACTTTTCAGAACACAGCC
GGTGCAATCAAGCATCAGGCCGTAGCAGTTCGAAATGGGGGTGATTTGTC
AGCATTCTATAGCTGCAGTTTCGAAGGATTCCAAGATACTTTGTATACTC
ATTCCCTAAGGCAGTTTTATAGAGAATGTGACATCTACGGTACTGTTGAT
TTTATATTTGGAAACGCAGCCGTTGTTTTCCAGAACTGCAACATATATCC
TCGACTCCCAATGAGTGGACAATTTAATGCCATCACTGCACAGGGCCGAA
CCGATCCTAACCAGAACACAGGCACATCGATTCATGACTGCAATATCGTG
GCTGCTGATGATCTGGCCTCGAGCAATACCGCCTTTCAAACGTATCTAGG
GAGACCTTGGAAAGAGTATTCGAGGACTGTATACATGCAGAATTACATGG
GAAGTTTGATAAATCCTGCTGGTTGGAAGGAATGGGATAGAACTTTTGCC
CTGAGTACATTATTCTATGCCGAGTATGACAACAGAGGACCTGGATCCAA
CACTTCCAGTAGGGTCACGTGGTCTGGTTACCATGTGATTAATGCTACCG
ATGCTGCTAATTTTACTGTGTCTAGCTTTTTGTTGGGAGACGACTGGTTA
CCAAATTCGGGAGTGCCTTACACTGCAAGCTTATTATGA
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protein sequence of Tc01v2_p025360.1

>Tc01v2_p025360.1 ID=Tc01v2_p025360.1|Name=Tc01v2_p025360.1|organism=Theobroma cacao|type=polypeptide|length=563bp
MASKLCSLLAMSLFILLPLFISPSLADAPPSDPVSPGTICKSTPDPSYCR
SVLPNQTTNVYNYGRFSVRKSLSQSRKFLKLVDKYLTEYRSSLSTSAIRA
LEDCHFLAGLNMDFLLSSFETVNATSKILSPVEAEDIQTLLSAILTNQQT
CLDGIQSTASAWSIRNGLAVPMTNDTKLYSVSLALFTKGWVPKRKKKAAW
QPSSKQLAFKHGRLLLKMSSRTRSIYETVSRRKLLQTTDADEVLVSNIVT
VSQDGSGNFTTINDAISAAPNNTKGVNGYFLIYITAGVYQEYISIAKNKK
YLMMVGDGINQTIITGNRSVVDGWTTFNSATFAVVAPNFVAVNITFQNTA
GAIKHQAVAVRNGGDLSAFYSCSFEGFQDTLYTHSLRQFYRECDIYGTVD
FIFGNAAVVFQNCNIYPRLPMSGQFNAITAQGRTDPNQNTGTSIHDCNIV
AADDLASSNTAFQTYLGRPWKEYSRTVYMQNYMGSLINPAGWKEWDRTFA
LSTLFYAEYDNRGPGSNTSSRVTWSGYHVINATDAANFTVSSFLLGDDWL
PNSGVPYTASLL*
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