Tc01v2_t022730.1

Overview
NameTc01v2_t022730.1
Unique NameTc01v2_t022730.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length3390
Properties
Property NameValue
Productmethylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial, transcript variant X1
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 35 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
NoteMethylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial
Cross References
External references for this mRNA
DatabaseAccession
GeneID18613295
GenbankXM_018123029.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g022730Tc01v2_g022730Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p022730.1Tc01v2_p022730.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto51320auto51320Theobroma cacaoexon
exon-auto51321auto51321Theobroma cacaoexon
exon-auto51322auto51322Theobroma cacaoexon
exon-auto51323auto51323Theobroma cacaoexon
exon-auto51324auto51324Theobroma cacaoexon
exon-auto51325auto51325Theobroma cacaoexon
exon-auto51326auto51326Theobroma cacaoexon
exon-auto51327auto51327Theobroma cacaoexon
exon-auto51328auto51328Theobroma cacaoexon
exon-auto51329auto51329Theobroma cacaoexon
exon-auto51330auto51330Theobroma cacaoexon
exon-auto51331auto51331Theobroma cacaoexon
exon-auto51332auto51332Theobroma cacaoexon
exon-auto51333auto51333Theobroma cacaoexon
exon-auto51334auto51334Theobroma cacaoexon
exon-auto51335auto51335Theobroma cacaoexon
exon-auto51336auto51336Theobroma cacaoexon
exon-auto51337auto51337Theobroma cacaoexon
exon-auto51338auto51338Theobroma cacaoexon
exon-auto51339auto51339Theobroma cacaoexon
exon-auto51340auto51340Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto51341auto51341Theobroma cacaoCDS
CDS-auto51342auto51342Theobroma cacaoCDS
CDS-auto51343auto51343Theobroma cacaoCDS
CDS-auto51344auto51344Theobroma cacaoCDS
CDS-auto51345auto51345Theobroma cacaoCDS
CDS-auto51346auto51346Theobroma cacaoCDS
CDS-auto51347auto51347Theobroma cacaoCDS
CDS-auto51348auto51348Theobroma cacaoCDS
CDS-auto51349auto51349Theobroma cacaoCDS
CDS-auto51350auto51350Theobroma cacaoCDS
CDS-auto51351auto51351Theobroma cacaoCDS
CDS-auto51352auto51352Theobroma cacaoCDS
CDS-auto51353auto51353Theobroma cacaoCDS
CDS-auto51354auto51354Theobroma cacaoCDS
CDS-auto51355auto51355Theobroma cacaoCDS
CDS-auto51356auto51356Theobroma cacaoCDS
CDS-auto51357auto51357Theobroma cacaoCDS
CDS-auto51358auto51358Theobroma cacaoCDS
CDS-auto51359auto51359Theobroma cacaoCDS
CDS-auto51360auto51360Theobroma cacaoCDS
CDS-auto51361auto51361Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t022730.1 ID=Tc01v2_t022730.1|Name=Tc01v2_t022730.1|organism=Theobroma cacao|type=mRNA|length=3390bp
ATGTCGTTAATGGCTTTAATCCTCCGCCGAAAGCTTCTTCACCACCCCAC
GCCCGTCCTTCTCCAACTAAGATTGCTCTCTTCCTCTACTTCTCACCTCG
AAACGCCTCCGCAGCGCATTGAGAAAATTCTAGTGGCGAACCGAGGTGAG
ATAGCATGCAGAATCATGAGGACAGCTAAGCGTCTAGGGATTCGGACCGT
GGCGGTTTACAGCGACGCCGATAAAGACTCTCTCCACGTGAAATCGGCGG
ACGAGGCGGTCCACATCGGTCCACCCCCCGCTCGGCTCAGTTACTTAAAC
GGCTCTTCCATTGTCGAGGCCGCAATTCGCAGTGGAGCACAGGCTATCCA
TCCCGGTTATGGTTTCTTATCGGAGAGCTCTGAGTTTGCTGGACTTGTTG
AAGATAAGGGACTTACATTTATTGGTCCTCCAACGTCTGCAATCCGAGAC
ATGGGTGACAAAAGTGCCTCAAAGAGAATAATGGGTGCGGCAGGGGTGCC
ATTGGTGCCGGGGTATCATGGCAGTGAACAAGATATAGAAATTATGAAGT
TGGAAGCAGATAAAATTGGATATCCTATCTTAATAAAGCCAACTCACGGA
GGTGGAGGAAAGGGCATGAGAATTGTACATAGTCAGAAGGATTTCATTGA
CTCCTTTTTGGGAGCACAACGGGAAGCTGCTGCGTCTTTTGGCATAAACA
CAATTTTGCTGGAGAAATACATTACACAACCAAGACACATTGAAGTCCAG
ATATTTGGTGACAAATATGGAAATGTTCTGCATTTATATGAGAGAGATTG
CAGTGTGCAAAGGAGACACCAGAAGATAATTGAAGAAGCTCCAGCTCCAT
GTGTTACTGATGAATTTCGCTCACACTTGGGTCAGGCTGCTGTATCTGCT
GCGAAGGCAGTTGGTTATCACAATGCTGGCACTGTGGAGTTTATAGTTGA
TACCATAACAGGTCAATTTTACTTTATGGAGATGAACACCCGACTTCAGG
TTGAGCATCCTGTGACTGAGATGATTGTTGGTCAAGATCTTGTGGAGTGG
CAAATTCGTGTTGCAAATGGGGAGCCTCTTCCTATAAGTCAGGTGCAGGT
GCCCTTATCAGGTCACTCTTTTGAAGCCCGAATCTATGCTGAAAATGTTC
CCAAAGGATTTCTTCCTGCAACTGGAGTTCTTCATCATTATCATCCTGTG
CCGGTTTCATCAACAGTTCGGGTTGAGACTGGAGTTGAACAAGGAGATGT
TGTTAGCATGCATTATGATCCTATGATCGCAAAGCTTGTAGTATGGGGAG
AAAACCGTTCTGCAGCACTAGTGAAATTGAAGGATTGTTTGTCAAAGTTT
CAGGTTGCAGGGGTGCCTACTAATATCAATTTCTTGCAAAAACTTGCTAA
CCATAGGGCATTTGAAGAGGGTGATGTAGAAACACATTTTATTGAGCACC
ATAAAGATGACCTATTTGTTGATCCTAATAATAAAGAAATTTCTGAGGAA
GCATATGATGCAGCTAGACTCAGTGCAAATCTGGTAGCTGCATGCCTTTG
TGAAGAGGAACATTCTACTTTAAAAGAAAGCCACCCCGGGGGTCCAAGCT
TACTTTCTATATGGTATGCTCATTCTCCGTTCAGAGTCAATCATCATGCT
CAGAGTACCATGGAACTTGAGTGGGAAAATGAATATGATAGCAGTAGCTC
AAAGCCTTTAATGCTTGCCATAACTTATCAGCGAGATGGGAACTATCTTA
TTCAGCATATACAGATCGGAGAAAACAGTGCCCATAGTTTGGAAGTCAGA
GCATCACATCTGGGCAACAATAGTTTTAGAGTTGAGGCTGATGGGGTAAC
CATGCATGTTAGTTTGGCTGTTTATATTAAGGATAAGATGAAACACATAC
ATATATGGCATGGACCACACCACCATCATTTTAGACAGAAACTGGGCCTT
GAGTTGTCTGATGAAGATGAAACACAGCATAAGACCAGTTTTGAGACCAC
AAGCCACCCTCCTGGAACCGTGGTGGCACCCATGGCTGGTTTAGTTGTCA
AGGTTCTGGTGGAGGATGGAGCAAAGGTGGAAGAAGGACAACCTGTATTG
GTCCTAGAAGCAATGAAGATGGAGCATGTGGTAAAGGCAACATCTGGTGG
TTATGTTCAAGGACTCAAAGTCACAGCTGGTCAACAGGTTTCAGATGGTA
GTGTTCTCTTCAGAGTCAAGATGGCTACAAGCAATGGTGAGGGAGCTGAA
GTTGTTGGAAAAACAGAGAAATCCGGAACAGAGGAGAAGGCCTTGGGGTC
TATTGGAAATCTTAGCAACAAGGACATGTTTCAAAGAGCAGATAAGATAG
ATTTCAAGAGCTGGGATTTGCATCTTGATAAGCACTTGAGCAGGGCTTGG
TCTAGGGACGACAGAGATATTTCAACTAAGACAAAGAAGGAAGAGTGGGA
AATTGATTTGGCTAAACTTGATATAAGGCATGTTATAGCTCATGGGACTT
ATGGCACCGTTTACCGTGGCGTTTATGATAGCCAAGATGTTGCAGTGAAG
GTATTGGATTGGGGGGAGGATGGGATTGCCACAGCTGCTGAAGCAGCTGC
TCTTCGGGCATCATTCCGGCAAGAGGTTGCTGTTTGGCATAAGCTTGACC
ATCCAAATGTTACAAAGTTTATTGGAGCTTCAATGGGAACTTCCAACCTT
AAGATCCCAACCAAAGGTGCAACAACTGAGAATAACAATTCTCTTCCTTC
CAGAGCATGTTGTGTTGTTGTTGAGTACCTTCCAGGTGGGACGTTAAAGA
ATTTTTTGATCAGAAACAGGAGGAAGAAACTGGCCTTTAAGGTTGTGATT
CAAATTGCTTTGGATCTCTCTAGAGGTTTGAGCTATCTTCACTCCAAAAA
GATAGTACACCGTGATGTCAAGACAGAAAATATGTTGCTAGATCCTCGTA
GAACTTTGAAAATTGCTGATTTTGGTGTTGCTCGAGTTGAAGCTCAGAAC
CCAAGAGACATGACTGGAGAAACAGGCACTCTTGGTTACATGGCTCCAGA
GGTCCTTGATGGGAAGCCTTACAATAGAAAATGTGATGTCTACAGCTTTG
GTATATGCTTGTGGGAAATATACTGCTGTGACATGCCTTATGCTGATCTT
AGTTTCGCTGAAGTTTCATCAGCAGTAGTACGACAGAATTTACGGCCAGA
AATTCCTAGATGTTGCCCAAGTTCATTGGCAAGCATCATGCGAAAATGTT
GGGATGCACATCCTGAAAGACGTCCTGACATGGATGAGGTAGTGAGATTG
CTAGAAGCAGTAGATACAAGCAAAGGAGGTGGCATGATACCTGATGACCA
AGCTCCTGGCTGTTTCTGTTTCACTGCTCGTGGCCCATGA
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protein sequence of Tc01v2_p022730.1

>Tc01v2_p022730.1 ID=Tc01v2_p022730.1|Name=Tc01v2_p022730.1|organism=Theobroma cacao|type=polypeptide|length=1130bp
MSLMALILRRKLLHHPTPVLLQLRLLSSSTSHLETPPQRIEKILVANRGE
IACRIMRTAKRLGIRTVAVYSDADKDSLHVKSADEAVHIGPPPARLSYLN
GSSIVEAAIRSGAQAIHPGYGFLSESSEFAGLVEDKGLTFIGPPTSAIRD
MGDKSASKRIMGAAGVPLVPGYHGSEQDIEIMKLEADKIGYPILIKPTHG
GGGKGMRIVHSQKDFIDSFLGAQREAAASFGINTILLEKYITQPRHIEVQ
IFGDKYGNVLHLYERDCSVQRRHQKIIEEAPAPCVTDEFRSHLGQAAVSA
AKAVGYHNAGTVEFIVDTITGQFYFMEMNTRLQVEHPVTEMIVGQDLVEW
QIRVANGEPLPISQVQVPLSGHSFEARIYAENVPKGFLPATGVLHHYHPV
PVSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRSAALVKLKDCLSKF
QVAGVPTNINFLQKLANHRAFEEGDVETHFIEHHKDDLFVDPNNKEISEE
AYDAARLSANLVAACLCEEEHSTLKESHPGGPSLLSIWYAHSPFRVNHHA
QSTMELEWENEYDSSSSKPLMLAITYQRDGNYLIQHIQIGENSAHSLEVR
ASHLGNNSFRVEADGVTMHVSLAVYIKDKMKHIHIWHGPHHHHFRQKLGL
ELSDEDETQHKTSFETTSHPPGTVVAPMAGLVVKVLVEDGAKVEEGQPVL
VLEAMKMEHVVKATSGGYVQGLKVTAGQQVSDGSVLFRVKMATSNGEGAE
VVGKTEKSGTEEKALGSIGNLSNKDMFQRADKIDFKSWDLHLDKHLSRAW
SRDDRDISTKTKKEEWEIDLAKLDIRHVIAHGTYGTVYRGVYDSQDVAVK
VLDWGEDGIATAAEAAALRASFRQEVAVWHKLDHPNVTKFIGASMGTSNL
KIPTKGATTENNNSLPSRACCVVVEYLPGGTLKNFLIRNRRKKLAFKVVI
QIALDLSRGLSYLHSKKIVHRDVKTENMLLDPRRTLKIADFGVARVEAQN
PRDMTGETGTLGYMAPEVLDGKPYNRKCDVYSFGICLWEIYCCDMPYADL
SFAEVSSAVVRQNLRPEIPRCCPSSLASIMRKCWDAHPERRPDMDEVVRL
LEAVDTSKGGGMIPDDQAPGCFCFTARGP*
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