Tc01v2_t022290.3

Overview
NameTc01v2_t022290.3
Unique NameTc01v2_t022290.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length783
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 5 ESTs, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
Producttryptophan synthase alpha chain, transcript variant X3
NoteTryptophan synthase alpha chain, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18613241
GenbankXM_018125405.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g022290Tc01v2_g022290Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p022290.3Tc01v2_p022290.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto49620auto49620Theobroma cacaoexon
exon-auto49621auto49621Theobroma cacaoexon
exon-auto49622auto49622Theobroma cacaoexon
exon-auto49623auto49623Theobroma cacaoexon
exon-auto49624auto49624Theobroma cacaoexon
exon-auto49625auto49625Theobroma cacaoexon
exon-auto49626auto49626Theobroma cacaoexon
exon-auto49627auto49627Theobroma cacaoexon
exon-auto49628auto49628Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto49629auto49629Theobroma cacaoCDS
CDS-auto49630auto49630Theobroma cacaoCDS
CDS-auto49631auto49631Theobroma cacaoCDS
CDS-auto49632auto49632Theobroma cacaoCDS
CDS-auto49633auto49633Theobroma cacaoCDS
CDS-auto49634auto49634Theobroma cacaoCDS
CDS-auto49635auto49635Theobroma cacaoCDS
CDS-auto49636auto49636Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t022290.3 ID=Tc01v2_t022290.3|Name=Tc01v2_t022290.3|organism=Theobroma cacao|type=mRNA|length=783bp
ATGGCTATTGCTCTGAAATCAACGGCCGACTTTCTCCACTTAAAGAAGCA
CAATCTCGCTTCACTATCTCGCCTTTCCTCCGGCAAGGCCTTTGTTTCAA
CCAAGAGATTCACTCCAATGGCTACTGTAACCACTGCTACAACTCTTGGC
CTTGCTGACACTTTCTCTAAATTGAAAACACAAGGCAAAGTTGCATTAAT
CCCATACATCACAGCTGGTGATCCTGATCTTTCAACAACAACTGAGGCAC
TTAAGGTGCTTGACTTATGTGGCGCAGACATAATTGAACTAGGTGTACCA
TATTCTGATCCTCTAGCTGATGGTCCTGTAATCCAGGCTGCGGCTACGCG
TTCTTTGGCAAGAGGAACCAACTTCAATGCTATTCTTTCAATGTTGAAGG
AGGTGGTTCCAGAGTTATCTTGTCCAATTGCTTTATTTACGTATTACAAC
CCAATTCTCAAGCGTGGGGTTGAGAAGTTTTTGTCCACTGTAAAGGATGT
AGGCATACATGGGCTTGTGGTTCCAGATGTTCCTTTGGAGGAGACTGAAA
TTTTGAGAAGAGAAGCTCTCAAAAACAAGATCGAATTGGTACTGCTTACA
ACACCGACTACACCAATAGACCGAATGAAAGCTATTGTCGAAGCATCAGA
AGGATTCGTGTATCTTGTGAGCTCAATTGGAGTTACTGGTGCCCGTGCAT
CTGTAAGTGATCGGGTTCAGACTCTTATTGGAGAAATTAAAGAGATTGCA
ATTACAAGTCAGTTCATCTCACATAAATTCTGA
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protein sequence of Tc01v2_p022290.3

>Tc01v2_p022290.3 ID=Tc01v2_p022290.3|Name=Tc01v2_p022290.3|organism=Theobroma cacao|type=polypeptide|length=261bp
MAIALKSTADFLHLKKHNLASLSRLSSGKAFVSTKRFTPMATVTTATTLG
LADTFSKLKTQGKVALIPYITAGDPDLSTTTEALKVLDLCGADIIELGVP
YSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPELSCPIALFTYYN
PILKRGVEKFLSTVKDVGIHGLVVPDVPLEETEILRREALKNKIELVLLT
TPTTPIDRMKAIVEASEGFVYLVSSIGVTGARASVSDRVQTLIGEIKEIA
ITSQFISHKF*
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