Tc01v2_t022250.1

Overview
NameTc01v2_t022250.1
Unique NameTc01v2_t022250.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length597
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 42 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productauxin-induced protein 22D
NoteAuxin-induced protein 22D
Cross References
External references for this mRNA
DatabaseAccession
GeneID18613237
GenbankXM_018118109.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g022250Tc01v2_g022250Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p022250.1Tc01v2_p022250.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto49527auto49527Theobroma cacaoexon
exon-auto49528auto49528Theobroma cacaoexon
exon-auto49529auto49529Theobroma cacaoexon
exon-auto49530auto49530Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto49531auto49531Theobroma cacaoCDS
CDS-auto49532auto49532Theobroma cacaoCDS
CDS-auto49533auto49533Theobroma cacaoCDS
CDS-auto49534auto49534Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t022250.1 ID=Tc01v2_t022250.1|Name=Tc01v2_t022250.1|organism=Theobroma cacao|type=mRNA|length=597bp
ATGGAAAGGAGAGTGAATTACCAGAACGATCTCAATCTCAAGGCAACGGA
GCTCAGATTGGGGTTGCCTGGGAGTGATGAGCCTGAGAAACAATCGACTC
CTTGTATCAGAAACAATAAGAGATCTTCATCAGAGATTTCTGAGGAGTCA
AGGTCTAAGAGCAGTTATTGCGTGACAGAGGCTGGAAAAGATGATCACCA
GGACACTGCCCCTCCTGTCAAGGCACAAGTTGTAGGATGGCCACCAATCC
GATCTTACAGGAAAAATTGTTTACAGACCAAGAACAATGAGGTTGAAGGG
GCAGGGATGTACGTGAAAGTAAGCGTTGATGGAGCTCCTTATCTCAGGAA
GATTGATCTCAAGGTTTACAGAAGCTACGCGGGGCTGCTCAAGGCCTTGG
AAAACATGTTCAAGCTCACCGTTGGTGCGTACTCAGAGAGGGAAGGCTAC
AATGGATCTGATTATGCTCCTACTTATGAAGACAAAGACGGTGATTGGAT
GCTTGTTGGAGATGTTCCCTGGGAAATGTTCATCTCCTCCTGCAAGAGGC
TGAGAATCATGAAAGGATCAGAAGCCAGAGGTTTGGGCTGTGTATGA
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protein sequence of Tc01v2_p022250.1

>Tc01v2_p022250.1 ID=Tc01v2_p022250.1|Name=Tc01v2_p022250.1|organism=Theobroma cacao|type=polypeptide|length=199bp
MERRVNYQNDLNLKATELRLGLPGSDEPEKQSTPCIRNNKRSSSEISEES
RSKSSYCVTEAGKDDHQDTAPPVKAQVVGWPPIRSYRKNCLQTKNNEVEG
AGMYVKVSVDGAPYLRKIDLKVYRSYAGLLKALENMFKLTVGAYSEREGY
NGSDYAPTYEDKDGDWMLVGDVPWEMFISSCKRLRIMKGSEARGLGCV*
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