Tc01v2_t021340.1

Overview
NameTc01v2_t021340.1
Unique NameTc01v2_t021340.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1035
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productprobable arabinose 5-phosphate isomerase
NoteProbable arabinose 5-phosphate isomerase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18613126
GenbankXM_007050211.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g021340Tc01v2_g021340Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p021340.1Tc01v2_p021340.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto47992auto47992Theobroma cacaoexon
exon-auto47993auto47993Theobroma cacaoexon
exon-auto47994auto47994Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto47995auto47995Theobroma cacaoCDS
CDS-auto47996auto47996Theobroma cacaoCDS
CDS-auto47997auto47997Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t021340.1 ID=Tc01v2_t021340.1|Name=Tc01v2_t021340.1|organism=Theobroma cacao|type=mRNA|length=1035bp
ATGGGATCTCTTCCTCCGTCACTTGACCTCCCAACACCGCCGTTGAAAAA
GCCTAGCCATCAACACATTCCCGAAACTGCCCTTCTCAACCTCTTCAAAT
CCCAACAAGAACACCTCAATTACTTCTTCCAAAACCTCAACTTATCCCAA
ACATTATCTTTCACCGAAACACTCCTCAATTCTCGGGGTACCATTTTCTT
CTCGGGTGTCGGAAAATCCGGATTCGTCGCCCACAAGATCTCTCAAACCC
TAGTTTCCCTCGGCATCCGCTCCTCTTTCCTCTCCCCTCTCGACGCCCTC
CACGGCGACATCGGCGCACTCTCCTCCGCCGACGTCCTTGTCCTCTTCTC
AAAATCTGGCTCCACCGAAGAACTCCTGCGCCTCGTCCCCTGTGCCAGAT
CCAAGGGGGCTTATCTCATTGCGGTTACCTCCGTTTCCAACAATGCCTTA
GCCAACGCTTGCGATATGAACGTGCATTTGCCGTTGCAGAGAGAATTGTG
CCCGTTCGATCTGGCGCCGGTGACTTCGACGGCGATCCAGATGGTGTTTG
GGGACACGGTGGCAATTGCGCTTATGGGAGCTAGGAACTTGACTAAGGAG
CAATACGCGGCGAATCATCCGGCTGGGAGGATTGGGAAAAGCCTTATTTT
CAAGGTAAAAGATGTTATGAAGAAGCAAGATGAACTTCCAATTTGCAAGG
AAGGAGATTTGATAATGGATCAGCTGGTGGAGCTGACTAGCAAAGGATGT
GGGTGCTTGCTGGTCGTAGATGAGGAATACCACTTGCTTGGCACATTTAC
TGATGGTGATTTGCGGCGTACTCTTAAGGCTAGCGGAGAAGGCATATTCA
AGCTCACGGTGGGAGAAATGTGCAACAGGAAACCAAGAACCATTGGTCCG
GATGCGATGGCAGTGGAAGCCATGCAAAGGATGGAATCACCACCTTCTCC
TGTACAATTTCTGCCCGTTATTGATCATCAGAACATCTTGATTGGCATTG
TCACATTGCATGGATTAGTTTCAGCTGGCCTTTGA
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protein sequence of Tc01v2_p021340.1

>Tc01v2_p021340.1 ID=Tc01v2_p021340.1|Name=Tc01v2_p021340.1|organism=Theobroma cacao|type=polypeptide|length=345bp
MGSLPPSLDLPTPPLKKPSHQHIPETALLNLFKSQQEHLNYFFQNLNLSQ
TLSFTETLLNSRGTIFFSGVGKSGFVAHKISQTLVSLGIRSSFLSPLDAL
HGDIGALSSADVLVLFSKSGSTEELLRLVPCARSKGAYLIAVTSVSNNAL
ANACDMNVHLPLQRELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLTKE
QYAANHPAGRIGKSLIFKVKDVMKKQDELPICKEGDLIMDQLVELTSKGC
GCLLVVDEEYHLLGTFTDGDLRRTLKASGEGIFKLTVGEMCNRKPRTIGP
DAMAVEAMQRMESPPSPVQFLPVIDHQNILIGIVTLHGLVSAGL*
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