Tc01v2_t021130.1

Overview
NameTc01v2_t021130.1
Unique NameTc01v2_t021130.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1266
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 11 ESTs, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productsuccinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial
NoteSuccinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial
Cross References
External references for this mRNA
DatabaseAccession
GeneID18613097
GenbankXM_007050157.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g021130Tc01v2_g021130Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p021130.1Tc01v2_p021130.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto47240auto47240Theobroma cacaoexon
exon-auto47241auto47241Theobroma cacaoexon
exon-auto47242auto47242Theobroma cacaoexon
exon-auto47243auto47243Theobroma cacaoexon
exon-auto47244auto47244Theobroma cacaoexon
exon-auto47245auto47245Theobroma cacaoexon
exon-auto47246auto47246Theobroma cacaoexon
exon-auto47247auto47247Theobroma cacaoexon
exon-auto47248auto47248Theobroma cacaoexon
exon-auto47249auto47249Theobroma cacaoexon
exon-auto47250auto47250Theobroma cacaoexon
exon-auto47251auto47251Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto47252auto47252Theobroma cacaoCDS
CDS-auto47253auto47253Theobroma cacaoCDS
CDS-auto47254auto47254Theobroma cacaoCDS
CDS-auto47255auto47255Theobroma cacaoCDS
CDS-auto47256auto47256Theobroma cacaoCDS
CDS-auto47257auto47257Theobroma cacaoCDS
CDS-auto47258auto47258Theobroma cacaoCDS
CDS-auto47259auto47259Theobroma cacaoCDS
CDS-auto47260auto47260Theobroma cacaoCDS
CDS-auto47261auto47261Theobroma cacaoCDS
CDS-auto47262auto47262Theobroma cacaoCDS
CDS-auto47263auto47263Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t021130.1 ID=Tc01v2_t021130.1|Name=Tc01v2_t021130.1|organism=Theobroma cacao|type=mRNA|length=1266bp
ATGAGAGGAATAGTGAACAAGCTCGTCTCCCTCTCTCTCTCCGTTGCCGG
CAAATGGCAGCAACAGCAGCTCCGCCGTCTCAACATCCACGAATATCAGG
GGGCTGAGTTGATGAGCAAATACGGAATTAACGTGCCCAAAGGAGTTGCT
GTTTCTTCTGTTGATGAAGTTAAACAAGCGGTCAAGGATGCCTTCCCCAA
TCAAAATGAGCTGGTGGTTAAAAGTCAAATTTTGGCTGGTGGAAGAGGCT
TGGGAACATTCCAAAACGGGTTTAAGGGTGGAGTTCACATCGTTAAGGCT
GACCAGGTTGAAGAAATAGCTGGAAGGATGCTTGGGCAGATACTTGTTAC
CAAGCAAACGGGCCCCCAAGGCAAAGTTGTCAGCAAGGTTTACCTGTGTG
AAAAGTTATCACTTGTGAACGAGATGTACTTTGCTATCACTCTGGATCGT
AACACTGCTGGTCCGCTTATAATTGCCTGTAGAAAGGGAGGAACCAGCAT
TGAAGACCTTGCAGAGAAATATCCTGACATGATTATTAAGGTACCTATTG
ATGTTTTCAAAGGAATTACTGATGAAGATGCTGCCAAGGTTGTGGATGGT
TTGGCTCCCAAGGTTGCTGATAGAACTGATTCTATTGAACAAGTGAAGAA
ACTATATAAGCTTTTCCATGAATGTGATTGTACATTGTTGGAAATCAATC
CTCTTGCTGAGACTTCTAGTAACCAATTAGTAGCTGCTGATGCAAAGTTG
AACTTCGATGATAATGCTGCTTTTCGTCAAAAGCAGATATTTGCTCTCCG
TGATCCATCACAAGAGGATCCTCGAGAAGTTGCTGCTGCGAAAGCTGATT
TAAATTACATTGGCCTAGATGGAGAAATTGGTTGCATGGTGAATGGTGCA
GGGTTAGCAATGGCTACAATGGATATAATTAAATTGCATGGGGGAACTCC
TGCCAATTTTCTGGATGTAGGTGGGAATGCTTCTGAAGGCCAGGTGGTCG
AGGCATTTAAGATATTGACTTCTGATGATAAAGTGAAAGCAATTTTGGTG
AACATATTTGGAGGAATAATGAAGTGTGATGTGATTGCGAGTGGAATTGT
CAATGCGGCCAAACAGGTTGCCCTAAAAGTTCCTGTGGTGGTTCGTCTTG
AAGGTACCAATGTTGACCAAGGGAAGAGGATTTTGAAGGAAAGTGGAATG
ACACTAATAACGGCAGAAGATTTGGATGATGCTGCAGAGAAAGCAGTTAA
AGCGGCAAGCAGTTGA
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protein sequence of Tc01v2_p021130.1

>Tc01v2_p021130.1 ID=Tc01v2_p021130.1|Name=Tc01v2_p021130.1|organism=Theobroma cacao|type=polypeptide|length=422bp
MRGIVNKLVSLSLSVAGKWQQQQLRRLNIHEYQGAELMSKYGINVPKGVA
VSSVDEVKQAVKDAFPNQNELVVKSQILAGGRGLGTFQNGFKGGVHIVKA
DQVEEIAGRMLGQILVTKQTGPQGKVVSKVYLCEKLSLVNEMYFAITLDR
NTAGPLIIACRKGGTSIEDLAEKYPDMIIKVPIDVFKGITDEDAAKVVDG
LAPKVADRTDSIEQVKKLYKLFHECDCTLLEINPLAETSSNQLVAADAKL
NFDDNAAFRQKQIFALRDPSQEDPREVAAAKADLNYIGLDGEIGCMVNGA
GLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDDKVKAILV
NIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGM
TLITAEDLDDAAEKAVKAASS*
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