Tc01v2_t020770.2

Overview
NameTc01v2_t020770.2
Unique NameTc01v2_t020770.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1467
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Producttyrosine decarboxylase 1, transcript variant X1
NoteTyrosine decarboxylase 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18613049
GenbankXM_007050078.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g020770Tc01v2_g020770Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p020770.2Tc01v2_p020770.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto46254auto46254Theobroma cacaoexon
exon-auto46255auto46255Theobroma cacaoexon
exon-auto46256auto46256Theobroma cacaoexon
exon-auto46257auto46257Theobroma cacaoexon
exon-auto46258auto46258Theobroma cacaoexon
exon-auto46259auto46259Theobroma cacaoexon
exon-auto46260auto46260Theobroma cacaoexon
exon-auto46261auto46261Theobroma cacaoexon
exon-auto46262auto46262Theobroma cacaoexon
exon-auto46263auto46263Theobroma cacaoexon
exon-auto46264auto46264Theobroma cacaoexon
exon-auto46265auto46265Theobroma cacaoexon
exon-auto46266auto46266Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto46267auto46267Theobroma cacaoCDS
CDS-auto46268auto46268Theobroma cacaoCDS
CDS-auto46269auto46269Theobroma cacaoCDS
CDS-auto46270auto46270Theobroma cacaoCDS
CDS-auto46271auto46271Theobroma cacaoCDS
CDS-auto46272auto46272Theobroma cacaoCDS
CDS-auto46273auto46273Theobroma cacaoCDS
CDS-auto46274auto46274Theobroma cacaoCDS
CDS-auto46275auto46275Theobroma cacaoCDS
CDS-auto46276auto46276Theobroma cacaoCDS
CDS-auto46277auto46277Theobroma cacaoCDS
CDS-auto46278auto46278Theobroma cacaoCDS
CDS-auto46279auto46279Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t020770.2 ID=Tc01v2_t020770.2|Name=Tc01v2_t020770.2|organism=Theobroma cacao|type=mRNA|length=1467bp
ATGGAGAACAGGTTGAAGCCAATGGATGCGGAACAGCTGAGAGAGTATGG
TCACAAGATGGTTGATTTCATTGCTGATTATTACAAAACCATTGAGAATT
TTCCTGTTCTCAGCCAAGTTGAGCCTGGATATCTTCGTAATCTGTTACCA
GATTCTGCACCTAATCAACCAGACTCATTTCAGCATGTTCTTGATGACAT
TCAAACAAAGATATTGCCAGGGGTTACTCATTGGCAGAGCCCAAATTATT
TTGCATACTATCCTTCTAATAGCAGCGTTGCTGGATTTTTGGGCGAAATG
CTCAGTGCTGGTCTCAATATTGTTGGTTTCAGTTGGATGACATCCCCTGC
TGCAACAGAGCTTGAAATGATTGTTTTAGACTGGCTTGGTAAGATGCTTA
AGCTACCTGAAGACTTCCTTTCAGCAGGACAAGGTGGCGGAGTGATACAG
GGCACAGCGAGTGAAGCTGTTCTAGTTGTTCTATTGGCTGCTCGTGACAA
GGTTTTGAAGGCGGTTGGAAAGGGTGCACTTGGAAAGCTTGTAGTTTACG
CTTCTGATCAAACACATGCTGCCTTGCAAAAAGCCTGTCAGATAGGAGGA
ATCCATCCTGAGAATTGCAGGCTGTTAAAAGCAAACTCTTCTACTAACTA
TGCACTTTCACCAGAGTTATTGAATGAAACAATTTCACAAGACCTTGCTC
ATGGATTGATTCCTTTCTTTCTATGTGCTACTGTTGGTACTACTTCATCA
ACAGCCGTTGATTCTTTGCTTGCATTAGGAAAGATTGCCAAGAGTAATGG
TATGTGGTTCCATGTGGATGCTGCATATGCCGGAACTGCTTGTGTGTGTC
CAGAATTCCGTCATTACATTGATGGCGTGGAAGAAGCTGATTCTTTTAAC
ATGAATGCACATAAATGGTTTCTAACTAATTTTGATTGTTCAGCACTCTG
GGTAAAGGATAGAAGGGCATTGGTTCAGGCCCTCTCCACAAATCCAGAGT
ATCTCAAGAATAAGGCGTCTCAAGCAAACATGGTTGTAGATTACAAAGAC
TGGCAAATTCCTCTTGGACGTCGATTTAGATCACTAAAGCTATGGATGGT
ATTACGGCTGTATGGCTTGGAAAACCTGCAGTGCTATATAAGAAATCATA
TCAAGTTAGCCAAACATTTTGAGGACCTGATTACTCAAGACTCAAGATTT
GAGGTTGTCACTCCTCAGATATTTTCATTAGTTTGTTTTCGTCTTTTGCC
TCCTGATGATGAACATCATGGTAACAAATTGAACCATGAATTATTAGATG
CTGTAAACTCAACTGGGAAGGTCTTCATATCTCACACGGTTTTATCAGGC
AAATACATACTGCGGTTTGCTGTAGGTGCCCCATTGACTGAAGAGAAGCA
TGTGAATGCAGCATGGAAAGTCTTGCAAGATAAGGCCACTGCCTTGCTAG
GGGAATGCTTAGGATAA
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protein sequence of Tc01v2_p020770.2

>Tc01v2_p020770.2 ID=Tc01v2_p020770.2|Name=Tc01v2_p020770.2|organism=Theobroma cacao|type=polypeptide|length=489bp
MENRLKPMDAEQLREYGHKMVDFIADYYKTIENFPVLSQVEPGYLRNLLP
DSAPNQPDSFQHVLDDIQTKILPGVTHWQSPNYFAYYPSNSSVAGFLGEM
LSAGLNIVGFSWMTSPAATELEMIVLDWLGKMLKLPEDFLSAGQGGGVIQ
GTASEAVLVVLLAARDKVLKAVGKGALGKLVVYASDQTHAALQKACQIGG
IHPENCRLLKANSSTNYALSPELLNETISQDLAHGLIPFFLCATVGTTSS
TAVDSLLALGKIAKSNGMWFHVDAAYAGTACVCPEFRHYIDGVEEADSFN
MNAHKWFLTNFDCSALWVKDRRALVQALSTNPEYLKNKASQANMVVDYKD
WQIPLGRRFRSLKLWMVLRLYGLENLQCYIRNHIKLAKHFEDLITQDSRF
EVVTPQIFSLVCFRLLPPDDEHHGNKLNHELLDAVNSTGKVFISHTVLSG
KYILRFAVGAPLTEEKHVNAAWKVLQDKATALLGECLG*
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