Tc01v2_t020650.1

Overview
NameTc01v2_t020650.1
Unique NameTc01v2_t020650.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1140
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 37 ESTs, 69 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productalcohol dehydrogenase class-3
NoteAlcohol dehydrogenase class-3
Cross References
External references for this mRNA
DatabaseAccession
GeneID18613034
GenbankXM_007050052.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g020650Tc01v2_g020650Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p020650.1Tc01v2_p020650.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto46000auto46000Theobroma cacaoexon
exon-auto46001auto46001Theobroma cacaoexon
exon-auto46002auto46002Theobroma cacaoexon
exon-auto46003auto46003Theobroma cacaoexon
exon-auto46004auto46004Theobroma cacaoexon
exon-auto46005auto46005Theobroma cacaoexon
exon-auto46006auto46006Theobroma cacaoexon
exon-auto46007auto46007Theobroma cacaoexon
exon-auto46008auto46008Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto46009auto46009Theobroma cacaoCDS
CDS-auto46010auto46010Theobroma cacaoCDS
CDS-auto46011auto46011Theobroma cacaoCDS
CDS-auto46012auto46012Theobroma cacaoCDS
CDS-auto46013auto46013Theobroma cacaoCDS
CDS-auto46014auto46014Theobroma cacaoCDS
CDS-auto46015auto46015Theobroma cacaoCDS
CDS-auto46016auto46016Theobroma cacaoCDS
CDS-auto46017auto46017Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t020650.1 ID=Tc01v2_t020650.1|Name=Tc01v2_t020650.1|organism=Theobroma cacao|type=mRNA|length=1140bp
ATGGCTACTCAAGGGCAAGTCATCACTTGCAAAGCGGCGGTGGCTTATGA
ACCGAACAAACCGCTGGTCATTGAGGATGTCCAGGTGGCTCCGCCGCAAG
CCGGTGAGGTTCGGATCAAGATTTTTTTCACTGCTCTCTGCCACACTGAT
GCGTACACTTGGAGCGGAAAGGATCCTGAGGGTCTATTCCCATGCATTCT
TGGTCATGAGGCTGCTGGGATTGTAGAAAGTGTTGGTGAAGGTGTAACTG
AAGTTCAACCAGGTGACCATGTCATCCCTTGTTACCAGGCAGAGTGTAGA
GAATGCAAGTTCTGCAAATCAGGAAAGACAAACCTATGCGGCAAAGTTAG
GGCAGCCACTGGAGCTGGAGTCATGATGAATGATCGCAAGAGTCGCTTCT
CAATAAATGGAAAACCAATATACCACTTCATGGGCACCTCGACATTCAGC
CAGTTCACGGTTGTACATGATGTTAGTGTTGCTAAGATTGATCCACAAGC
TCCTTTGGACAAAGTAAGCCTTCTTGGATGTGGTGTTCCAACTGGACTTG
GAGCAGTTTGGAATACTGCCAAAGTTGAACCAGGGGCTATTGTTGCTATT
TTTGGCCTTGGGACTGTTGGTCTTGCAGTTGCAGAGGGTGCAAAATCAGC
TGGTGCTTCACGAATAATTGGTGTAGATATTGACAGCAAAAGGTTTGATG
TAGCAAAAAATTTTGGAGTTACAGAGTTTGTGAACCCAAAGGACTATGAT
AAACCAATTCAGCAGGTCCTTGTTGATGTCACGGATGGTGGTGTTGATTA
CAGTTTTGAGTGTATTGGAAATGTCTCTGTCATGAGGGCTGCTTTGGAAT
GCTGTCACAAGGGCTGGGGAACATCAGTTATCATAGGTGTTGCTGCATCA
GGTCAGGAGATATCTACTCGACCTTTCCAATTGGTGACTGGTCGTGTTTG
GAAAGGGACTGCTTTTGGTGGTTTCAAGAGCCGTTCACAAGTGCCTTGGC
TTGTGGACAAGTACATGAAGAAGGAAATCAAAATTGATGAATACATTACC
CACAATTTGACTCTTGGAGAGATTAACAGTGCATTTGATCTGATGCATGA
AGGGGGTTGCCTCCGTTGTGTGCTTAAGATGCATGAATGA
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protein sequence of Tc01v2_p020650.1

>Tc01v2_p020650.1 ID=Tc01v2_p020650.1|Name=Tc01v2_p020650.1|organism=Theobroma cacao|type=polypeptide|length=380bp
MATQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKIFFTALCHTD
AYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECR
ECKFCKSGKTNLCGKVRAATGAGVMMNDRKSRFSINGKPIYHFMGTSTFS
QFTVVHDVSVAKIDPQAPLDKVSLLGCGVPTGLGAVWNTAKVEPGAIVAI
FGLGTVGLAVAEGAKSAGASRIIGVDIDSKRFDVAKNFGVTEFVNPKDYD
KPIQQVLVDVTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIIGVAAS
GQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKIDEYIT
HNLTLGEINSAFDLMHEGGCLRCVLKMHE*
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