Tc01v2_t019300.1

Overview
NameTc01v2_t019300.1
Unique NameTc01v2_t019300.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1680
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
Producttranscription factor PIF1, transcript variant X2
NotePutative Transcription factor PIF1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18612859
GenbankXM_007049821.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g019300Tc01v2_g019300Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p019300.1Tc01v2_p019300.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto43698auto43698Theobroma cacaoexon
exon-auto43699auto43699Theobroma cacaoexon
exon-auto43700auto43700Theobroma cacaoexon
exon-auto43701auto43701Theobroma cacaoexon
exon-auto43702auto43702Theobroma cacaoexon
exon-auto43703auto43703Theobroma cacaoexon
exon-auto43704auto43704Theobroma cacaoexon
exon-auto43705auto43705Theobroma cacaoexon
exon-auto43706auto43706Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto43707auto43707Theobroma cacaoCDS
CDS-auto43708auto43708Theobroma cacaoCDS
CDS-auto43709auto43709Theobroma cacaoCDS
CDS-auto43710auto43710Theobroma cacaoCDS
CDS-auto43711auto43711Theobroma cacaoCDS
CDS-auto43712auto43712Theobroma cacaoCDS
CDS-auto43713auto43713Theobroma cacaoCDS
CDS-auto43714auto43714Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t019300.1 ID=Tc01v2_t019300.1|Name=Tc01v2_t019300.1|organism=Theobroma cacao|type=mRNA|length=1680bp
ATGAATCACTGCGTTCCCGATTTCGAAATGGGAGACGATTATTCAATCCC
TTCTTCTTCTAGCTTAACTCGCTCCAAAAAACCTCCCATGCCAGAGGATG
AAATCATGGAGCTGTTATGGCAAAACGGTCAAGTTGTTGTGCAGAGTCAA
AACCAAAGATCTTTCAAGAAATCACCGCCGTTCAAATTCCACGACGCCGA
TCAATCAGCTCCGAAGGAGATCCGATCATCTCCATCTCATCATCAACATC
ATCAGCAACAGCAGCAACAATCGGTTACCGATCATCTCTTCATGCAAGAA
GATGAAATGGCTTCATGGCTTCACTATCCTCTCAACGACGCCAACTTCGA
CCACGATTTCTGCGCTGATCTCCTCTATCCTTCTTCTTCCGCCGCCGCCG
CCGCTAATCCTTGCGTCACCTCCACCGCCACCGCCGCTCCTCCTCCACTC
GGAAGAGTTTCTCAAGTTTCGGCTTCGGCGGCGGCGTCAGCTCCTCGGCC
GCCGATACCACCGGCGAGGAGGAATGAGTTGGAGTCGACGAGGATCCAGA
ACTTCGTTCACTTCTCGAGGCATAAAACAGCGAGGGTGGAGCAATCTGGA
CCGTCTAATTCGAAGAGTGTAGTGAGGGAATCGACGGTCGTTGACTCGAG
CGAGACTCCGGCGATGGCCCCCGATTCGAGAGGCTCTCAGGCTGTGCCTA
GCAACACCGAGGCAGCATCTGGCGGGAACAACAACAATGCATCCGCCACC
GTGAGCGCCGCTGCAGTTGCCAGCACGCAATCAGCTGGCGTCAGTGTAGA
TGCCACCAAAGACAATTTGGCCACGTGCGAGGTCACAGTAACGTCATCTC
CTGGCGGCTCCAGTGCCAGCGCGGAGCCGGCGACTCAGAAGGCTGCGCCG
GCTGAGGACCGGAAGCGTAAAGGAAGAGAACCGGACGACGCCGAATGTCA
CAGCGAGGATGCTGAGTTTGAATCCGCTGACACAAAGAAACAAACACGTG
GATCCACATCTACAAAAAGGTCTCGTGCTGCGGAGGTCCATAACCTCTCA
GAGAGGAGGCGCAGAGATAGGATAAATGAAAAGATGAGGGCTTTGCAAGA
ACTTATACCTCGTTGCAACAAGTCAGACAAAGCTTCAATGCTGGATGAAG
CAATTGAATACCTGAAGTCACTTCAGTTGCAAGTTCAGATGATGTCCATG
GGTTGTGGCATGGTCCCAGTGATGTTTCCTGGAGTTCAGCAGTACATGCC
AACAATGGGAATGGGAATTGGGATGGGCATGGGCATGGGCATGGATATGG
GAATAAGTCGGCCAATGATGCCATTTCCCAATGTTTTGGCCGGTTCAGCA
TTACCAACACCAGCTGCTGCAGCTCATTTGGGTCCAAGGTTTCCTCTGCC
AGCCTTTCATATGCCACTACCAGTTCCAGCTCCTGATCCATCAAGAATCC
AACCAAACAATCAGTCAGAAGCCATGCTAAACACGCTTGGCATGCAAAAT
CCAACCCAGCCGCGGGCCCCAAATTTTGCTGATCCTTATCAGCAATATCT
TGGTCTTCAACAGATGCAATTACCCCCACTCCAGAGTCAAGGAATGGCCC
AGCCAAGTTCCCGTAAACCAAGTAGCAGTAGGGGAGCTGAGAATCTTAAA
AATCACCCATCTGGTGACATGACACGGTAG
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protein sequence of Tc01v2_p019300.1

>Tc01v2_p019300.1 ID=Tc01v2_p019300.1|Name=Tc01v2_p019300.1|organism=Theobroma cacao|type=polypeptide|length=560bp
MNHCVPDFEMGDDYSIPSSSSLTRSKKPPMPEDEIMELLWQNGQVVVQSQ
NQRSFKKSPPFKFHDADQSAPKEIRSSPSHHQHHQQQQQQSVTDHLFMQE
DEMASWLHYPLNDANFDHDFCADLLYPSSSAAAAANPCVTSTATAAPPPL
GRVSQVSASAAASAPRPPIPPARRNELESTRIQNFVHFSRHKTARVEQSG
PSNSKSVVRESTVVDSSETPAMAPDSRGSQAVPSNTEAASGGNNNNASAT
VSAAAVASTQSAGVSVDATKDNLATCEVTVTSSPGGSSASAEPATQKAAP
AEDRKRKGREPDDAECHSEDAEFESADTKKQTRGSTSTKRSRAAEVHNLS
ERRRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSM
GCGMVPVMFPGVQQYMPTMGMGIGMGMGMGMDMGISRPMMPFPNVLAGSA
LPTPAAAAHLGPRFPLPAFHMPLPVPAPDPSRIQPNNQSEAMLNTLGMQN
PTQPRAPNFADPYQQYLGLQQMQLPPLQSQGMAQPSSRKPSSSRGAENLK
NHPSGDMTR*
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