Tc01v2_t019010.1

Overview
NameTc01v2_t019010.1
Unique NameTc01v2_t019010.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length264
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 12 ESTs, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productsm-like protein LSM5
NoteSm-like protein LSM5
Cross References
External references for this mRNA
DatabaseAccession
GeneID18612818
GenbankXM_018114514.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g019010Tc01v2_g019010Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p019010.1Tc01v2_p019010.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto43223auto43223Theobroma cacaoexon
exon-auto43224auto43224Theobroma cacaoexon
exon-auto43225auto43225Theobroma cacaoexon
exon-auto43226auto43226Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto43227auto43227Theobroma cacaoCDS
CDS-auto43228auto43228Theobroma cacaoCDS
CDS-auto43229auto43229Theobroma cacaoCDS
CDS-auto43230auto43230Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t019010.1 ID=Tc01v2_t019010.1|Name=Tc01v2_t019010.1|organism=Theobroma cacao|type=mRNA|length=264bp
ATGGCAAACAATCCCTCGCAGCTTCTTCCATCAGAGTTGATTGACAGGTG
CATTGGCTCCAAAATATGGGTGATAATGAAAGGGGACAAGGAGCTTGTGG
GTACTCTAAGAGGCTTTGATGTCTACGTCAACATGGTCCTCGAAGATGTC
ACCGAATATGAGATCACTGCTGAAGGAAGACGGATCACAAAGCTTGATCA
GATTTTGCTTAATGGAAACAACATTGCTATTCTGGTTCCAGGAGGCTCAC
CTGATCCAGAATGA
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protein sequence of Tc01v2_p019010.1

>Tc01v2_p019010.1 ID=Tc01v2_p019010.1|Name=Tc01v2_p019010.1|organism=Theobroma cacao|type=polypeptide|length=88bp
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDV
TEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE*
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