Tc01v2_t018530.1

Overview
NameTc01v2_t018530.1
Unique NameTc01v2_t018530.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2031
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
ProductGPI transamidase component PIG-T
NoteGPI transamidase component Gpi16 subunit family protein isoform 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18612758
GenbankXM_018113978.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g018530Tc01v2_g018530Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p018530.1Tc01v2_p018530.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto41740auto41740Theobroma cacaoexon
exon-auto41741auto41741Theobroma cacaoexon
exon-auto41742auto41742Theobroma cacaoexon
exon-auto41743auto41743Theobroma cacaoexon
exon-auto41744auto41744Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto41745auto41745Theobroma cacaoCDS
CDS-auto41746auto41746Theobroma cacaoCDS
CDS-auto41747auto41747Theobroma cacaoCDS
CDS-auto41748auto41748Theobroma cacaoCDS
CDS-auto41749auto41749Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t018530.1 ID=Tc01v2_t018530.1|Name=Tc01v2_t018530.1|organism=Theobroma cacao|type=mRNA|length=2031bp
ATGACGCTTCTTCAAAGACCAGTTCTTGTGCTCCTTCTCCTAGTAACTCA
TCACCTCTTGCAGTGTTGGATTGCTTTTGGATCGGTCGATGAAGAAGGCC
AAAAACAAGAAGAATTCAATGAGGAACTACTATTGAAGCCACTGCCGGAT
CGAACAGTGTTGGCCCATTTCCATTTTCAAAGCTCTGCCCCTCCTTCCAC
CTCTAATGGCCGCCATCACCACTTGTTTCCGAAAGCCATTTCTCAGTTGG
TTCAGAAATTTCGAGTTAAGGAAATGGAGCTGTCTTTCACACAAGGTCGC
TGGAACTATGAAAGATGGGGTGGATTTGATCCCATAGCAAGCAGCAATGC
AAAGCCCCCTGGAGTTGAGTTATGGGCTGTCTTTGATGTCCCACAACATC
AGGTTGATGCTTCCTGGAAGAATTTAACACACGCTCTCTCTGGTCTTTTC
TGTGCCTCAATCAACTTCCTAGAGTCTACTTCAACTTATTCTGCCCCAGA
ATGGAGTTTTCCACCCTCTTCAGGCAATCTGAGGTATGGTACATTGCCCC
GTGAAGCTGTTTGCACTGAGAATCTAACTCCATGGCTGAAGTTGCTTCCT
TGTCGGGATAAAGCTGGGCTTGCTGTGTTACTGGATAGGCCATCTATTTA
CAGGGGTTTTTATCATTCTCAGCGATTGCATTTGACCTCAACTGGATCTG
GTTCAAAGGGGACTGATTCAGGCATCATATTAAACCAGGCACTTACAGTT
GTTCTTCAGCCTATCCAGCCAAATGGTCAAAGAGCTAGTATGGACCATGC
TAGTGAAAAGCATATTCAACCAAGCTGGTCTCTTAGTTCAATTTTTGGGA
AACAAGTTCGTGGAAGATGTGTTCTTGCGAAATCTAGTAAAGTGTATCTT
CAACTTGATAGAGGCTTAGTTGCTGAACTGAAGCGTATCCATAAAGAAAA
TGAGAAGTCTGTGGCAAATGGTTTAACCTCTGAGAATTTTTGGAGTTATC
CCAGCTTTGAGTTGTCTGCTAACCCGGACAGGATAGTTGTAGAAGAAAAT
AGCTTGCATAGCAAGAGCTCATCCATTTTGTATAATTTCCAAGTTGAGAA
ATACAGTGAATCTGAGCCATTAGATCTTGGCCTTACTTGGAAGATTCCTG
TAGTTTGGTTGTGTCAATCAGCACCGTTACATTCTAGTAGGTACTTGATG
GGAAGCGGGAATGAGAGGGGTGCCATTGCTATTTCCTTGAAATCTACACA
ATTGCGAGAGGGCTTCATGGGTGCTTTTGCCGATAATGAAAGGTGTGAAT
TGCGAGTTGATGTTTTTCAAGTTGTGCCTTGGTATGTTAAGGTCTATTTC
CATTCTCTGCAAGTGTTCATTGATCAACAACCTAAGGCTGTTTCAGATGT
TATTGAGAAGATACACGTTTCACCTTCTAAAGACAAAGTTTCACCTGGCA
TGATGGAAATGGTTCTGAAACTTCCTTGCAGAGTAAAATCAGCTGCTTTA
ACCATAGAGTTTGATAAGGGTTTTTTACATATTGATGAATACCCCCCTGA
TGCTAATCAAGGATTCGACATACCATCAGCTATTATAAGCTTTCCCAACT
TCCATGCAAGCATGTTTTTTCTTGAAGATGGCTCTGTAAACAAGTCACCC
TTGTTGTCAAAGTTTCAGGAAAAGAGTCCTGTAATGTCTTACACAGAAGT
ATTATTGGTACCTTTGACAACTCCTGATTTCAGCATGCCTTATAATGTTA
TCACAATCACGTGCACGGTGTTTGCGTTGTATTTCGGATCATTGCTCAAT
GTACTACGAAGGCGTATTGCTGAGGAGGAGAGGTTTCTTAAAGACAAAGC
CACCAAGAAAACTGGTCAGCTACCTCTGCTGCTATCAAAGTTGTCTGCCA
AGCTTAGAGGTAGACCATGGGAACCTCCGCATTCACCCCCATCTTCATCA
TTCTTCATTAGTTCTAAGTTAGTATTCAAAGTCATACTAGTAGCTGGACT
GGCTGTAAGTTGGCAGTACTATTTTTCGTGA
back to top

protein sequence of Tc01v2_p018530.1

>Tc01v2_p018530.1 ID=Tc01v2_p018530.1|Name=Tc01v2_p018530.1|organism=Theobroma cacao|type=polypeptide|length=677bp
MTLLQRPVLVLLLLVTHHLLQCWIAFGSVDEEGQKQEEFNEELLLKPLPD
RTVLAHFHFQSSAPPSTSNGRHHHLFPKAISQLVQKFRVKEMELSFTQGR
WNYERWGGFDPIASSNAKPPGVELWAVFDVPQHQVDASWKNLTHALSGLF
CASINFLESTSTYSAPEWSFPPSSGNLRYGTLPREAVCTENLTPWLKLLP
CRDKAGLAVLLDRPSIYRGFYHSQRLHLTSTGSGSKGTDSGIILNQALTV
VLQPIQPNGQRASMDHASEKHIQPSWSLSSIFGKQVRGRCVLAKSSKVYL
QLDRGLVAELKRIHKENEKSVANGLTSENFWSYPSFELSANPDRIVVEEN
SLHSKSSSILYNFQVEKYSESEPLDLGLTWKIPVVWLCQSAPLHSSRYLM
GSGNERGAIAISLKSTQLREGFMGAFADNERCELRVDVFQVVPWYVKVYF
HSLQVFIDQQPKAVSDVIEKIHVSPSKDKVSPGMMEMVLKLPCRVKSAAL
TIEFDKGFLHIDEYPPDANQGFDIPSAIISFPNFHASMFFLEDGSVNKSP
LLSKFQEKSPVMSYTEVLLVPLTTPDFSMPYNVITITCTVFALYFGSLLN
VLRRRIAEEERFLKDKATKKTGQLPLLLSKLSAKLRGRPWEPPHSPPSSS
FFISSKLVFKVILVAGLAVSWQYYFS*
back to top