Tc01v2_t016290.2

Overview
NameTc01v2_t016290.2
Unique NameTc01v2_t016290.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1764
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 44 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
Productglucose-6-phosphate 1-dehydrogenase 1, chloroplastic, transcript variant X2
NoteGlucose-6-phosphate 1-dehydrogenase 1, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18612476
GenbankXM_007049286.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g016290Tc01v2_g016290Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p016290.2Tc01v2_p016290.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto37244auto37244Theobroma cacaoexon
exon-auto37245auto37245Theobroma cacaoexon
exon-auto37246auto37246Theobroma cacaoexon
exon-auto37247auto37247Theobroma cacaoexon
exon-auto37248auto37248Theobroma cacaoexon
exon-auto37249auto37249Theobroma cacaoexon
exon-auto37250auto37250Theobroma cacaoexon
exon-auto37251auto37251Theobroma cacaoexon
exon-auto37252auto37252Theobroma cacaoexon
exon-auto37253auto37253Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto37254auto37254Theobroma cacaoCDS
CDS-auto37255auto37255Theobroma cacaoCDS
CDS-auto37256auto37256Theobroma cacaoCDS
CDS-auto37257auto37257Theobroma cacaoCDS
CDS-auto37258auto37258Theobroma cacaoCDS
CDS-auto37259auto37259Theobroma cacaoCDS
CDS-auto37260auto37260Theobroma cacaoCDS
CDS-auto37261auto37261Theobroma cacaoCDS
CDS-auto37262auto37262Theobroma cacaoCDS
CDS-auto37263auto37263Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t016290.2 ID=Tc01v2_t016290.2|Name=Tc01v2_t016290.2|organism=Theobroma cacao|type=mRNA|length=1764bp
ATGGCTACACACTTTAGTCCTTGTTCTTCATCTTCCTCGTCCTCTTCTTC
ACTTACCTTCTCTTCTGAATTCACTGTTTGTAAGCCTAGAAGATATTGTT
TCTCCAAATGGGTTTCCCAAGTTCATCCAAGGATCCATGCGAGAAACCAT
TTCCGGATCAAATCCTCAAATGGGCATCCACCAAATGCAGTTTCTATGCA
GGATGGTATGGATGGAACCCCTTTGGCCGAGGGAATCAAGCCTGAAGAGC
AAGAAATTTTCTTTGACTTATCTGACTCAGAGAAAGTACAGTCTACTCTT
AGCATAACTGTTGTTGGAGCTTCAGGGGACCTTGCTAAGAAGAAAATTTT
TCCAGCCCTTTTTGCTCTTTACTATGAAGATTGTCTACCTGAGAACTTTA
TGGTTTTCGGTTATGCTCGTACTAAACTGACAGATGAAGAGCTCAGGAAC
GTGATTAGTGGAACATTAACTTGTAGAATTGATAAGAGGGCAAATTGTGA
AGATAAAATGGAGCAGTTCTTGAAGAGATGCTTTTACCATTCAGGTCAGT
ATGATTCTGAGGAGCATTTTGCAGAACTAGACAGCAAGCTGAAAGAGAAA
GAGGCTGGAAAACTGTCAAATAGGTTATTTTACTTGTCAATACCTCCAAA
CATATTCGTGGATGTGGTGAGATGTGTCAGTTATAAAGCTTCTGCAGTAA
ATGGTTGGACAAGGGTGATCGTTGAAAAGCCATTTGGCCGTGATTCAGAG
TCCTCTGCTGAGCTAACAAGATGTCTTAAGCAGTATCTAACTGAGGATCA
GATATTCAGGATTGACCATTACTTGGGCAAGGAACTTGTTGAGAATCTCT
CAGTGCTTCGCTTCTCAAATCTTGTTTTTGAACCCCTATGGTCAAGGAAT
TATATCCGGAATGTGCAATTGATATTTTCTGAAGATTTTGGTACTGAAGG
ACGAGGGGGTTATTTTGATAATTATGGAATCATACGAGATATAATGCAAA
ATCATCTCCTGCAAATACTGGCACTATTTGCAATGGAGACTCCTGTCAGC
TTAGAAGCTGAGGACATCAGGAATGAAAAGGTAAAGGTTCTGAGATCAAT
GAGACCACTGCAGCTTGAGGATGTCATTGTTGGTCAGTATAAGGGCCACA
ACAAGGGTGGTAAAATATATCCAGGTTACTCTGATGACTCAACTGTACCG
AATGACAGTCTTACACCTACATTTGCGGCAGCAGCTCTGTTTATAAATAA
TGCTAGATGGGATGGTGTCCCTTTTCTCATGAAGGCTGGAAAAGCTCTCC
ATACGAGGCGGGCAGAGATCAGAGTTCAGTTCAGACATGTTCCAGGTAAT
TTGTACAAGCAGAATTTTGGAACTGATTTAGACAAGGCAACAAATGAGCT
TGTGCTACGTGTGCAACCTGATGAAGCCATTTACCTGAAGATCAATAATA
AAGTTCCTGGTCTTGGAATGAGATTAGATCGCAGTGACCTTAATTTGCTC
TATCGAGCAAGGTATCCAAAAGAAATCCCAGATGCATATGAGAGATTGCT
CTTAGATGCTATAGCTGGTGAGCGAAGGTTGTTCATTAGAAGTGATGAGC
TGGATGCTGCTTGGTCACTGTTTACACCATTGTTGAGGGAACTTGAAGAA
AAAAAGATTTTTCCAGAGCTCTACCCTTATGGGAGCAGAGGACCAGTTGG
AGCACATTATCTTGCTGCTAAGTACAATGTTCGATGGGGTGATCTCAGTG
GTGAAGACTTGTAA
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protein sequence of Tc01v2_p016290.2

>Tc01v2_p016290.2 ID=Tc01v2_p016290.2|Name=Tc01v2_p016290.2|organism=Theobroma cacao|type=polypeptide|length=588bp
MATHFSPCSSSSSSSSSLTFSSEFTVCKPRRYCFSKWVSQVHPRIHARNH
FRIKSSNGHPPNAVSMQDGMDGTPLAEGIKPEEQEIFFDLSDSEKVQSTL
SITVVGASGDLAKKKIFPALFALYYEDCLPENFMVFGYARTKLTDEELRN
VISGTLTCRIDKRANCEDKMEQFLKRCFYHSGQYDSEEHFAELDSKLKEK
EAGKLSNRLFYLSIPPNIFVDVVRCVSYKASAVNGWTRVIVEKPFGRDSE
SSAELTRCLKQYLTEDQIFRIDHYLGKELVENLSVLRFSNLVFEPLWSRN
YIRNVQLIFSEDFGTEGRGGYFDNYGIIRDIMQNHLLQILALFAMETPVS
LEAEDIRNEKVKVLRSMRPLQLEDVIVGQYKGHNKGGKIYPGYSDDSTVP
NDSLTPTFAAAALFINNARWDGVPFLMKAGKALHTRRAEIRVQFRHVPGN
LYKQNFGTDLDKATNELVLRVQPDEAIYLKINNKVPGLGMRLDRSDLNLL
YRARYPKEIPDAYERLLLDAIAGERRLFIRSDELDAAWSLFTPLLRELEE
KKIFPELYPYGSRGPVGAHYLAAKYNVRWGDLSGEDL*
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