Tc01v2_t016290.1

Overview
NameTc01v2_t016290.1
Unique NameTc01v2_t016290.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1779
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 36 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
Productglucose-6-phosphate 1-dehydrogenase 1, chloroplastic, transcript variant X1
NoteGlucose-6-phosphate 1-dehydrogenase 1, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18612476
GenbankXM_018114418.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g016290Tc01v2_g016290Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p016290.1Tc01v2_p016290.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto37222auto37222Theobroma cacaoexon
exon-auto37223auto37223Theobroma cacaoexon
exon-auto37224auto37224Theobroma cacaoexon
exon-auto37225auto37225Theobroma cacaoexon
exon-auto37226auto37226Theobroma cacaoexon
exon-auto37227auto37227Theobroma cacaoexon
exon-auto37228auto37228Theobroma cacaoexon
exon-auto37229auto37229Theobroma cacaoexon
exon-auto37230auto37230Theobroma cacaoexon
exon-auto37231auto37231Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto37232auto37232Theobroma cacaoCDS
CDS-auto37233auto37233Theobroma cacaoCDS
CDS-auto37234auto37234Theobroma cacaoCDS
CDS-auto37235auto37235Theobroma cacaoCDS
CDS-auto37236auto37236Theobroma cacaoCDS
CDS-auto37237auto37237Theobroma cacaoCDS
CDS-auto37238auto37238Theobroma cacaoCDS
CDS-auto37239auto37239Theobroma cacaoCDS
CDS-auto37240auto37240Theobroma cacaoCDS
CDS-auto37241auto37241Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t016290.1 ID=Tc01v2_t016290.1|Name=Tc01v2_t016290.1|organism=Theobroma cacao|type=mRNA|length=1779bp
ATGGCTACACACTTTAGTCCTTGTTCTTCATCTTCCTCGTCCTCTTCTTC
ACTTACCTTCTCTTCTGAATTCACTGTTTGTAAGCCTAGAAGATATTGTT
TCTCCAAATGGGTTTCCCAAGTTCATCCAAGGATCCATGCGAGAAACCAT
TTCCGGATCAAATCCTCAAATGGGCATCCACCAAATGCAGTTTCTATGCA
GGATGGGCTCTTTGGATTAGGTATGGATGGAACCCCTTTGGCCGAGGGAA
TCAAGCCTGAAGAGCAAGAAATTTTCTTTGACTTATCTGACTCAGAGAAA
GTACAGTCTACTCTTAGCATAACTGTTGTTGGAGCTTCAGGGGACCTTGC
TAAGAAGAAAATTTTTCCAGCCCTTTTTGCTCTTTACTATGAAGATTGTC
TACCTGAGAACTTTATGGTTTTCGGTTATGCTCGTACTAAACTGACAGAT
GAAGAGCTCAGGAACGTGATTAGTGGAACATTAACTTGTAGAATTGATAA
GAGGGCAAATTGTGAAGATAAAATGGAGCAGTTCTTGAAGAGATGCTTTT
ACCATTCAGGTCAGTATGATTCTGAGGAGCATTTTGCAGAACTAGACAGC
AAGCTGAAAGAGAAAGAGGCTGGAAAACTGTCAAATAGGTTATTTTACTT
GTCAATACCTCCAAACATATTCGTGGATGTGGTGAGATGTGTCAGTTATA
AAGCTTCTGCAGTAAATGGTTGGACAAGGGTGATCGTTGAAAAGCCATTT
GGCCGTGATTCAGAGTCCTCTGCTGAGCTAACAAGATGTCTTAAGCAGTA
TCTAACTGAGGATCAGATATTCAGGATTGACCATTACTTGGGCAAGGAAC
TTGTTGAGAATCTCTCAGTGCTTCGCTTCTCAAATCTTGTTTTTGAACCC
CTATGGTCAAGGAATTATATCCGGAATGTGCAATTGATATTTTCTGAAGA
TTTTGGTACTGAAGGACGAGGGGGTTATTTTGATAATTATGGAATCATAC
GAGATATAATGCAAAATCATCTCCTGCAAATACTGGCACTATTTGCAATG
GAGACTCCTGTCAGCTTAGAAGCTGAGGACATCAGGAATGAAAAGGTAAA
GGTTCTGAGATCAATGAGACCACTGCAGCTTGAGGATGTCATTGTTGGTC
AGTATAAGGGCCACAACAAGGGTGGTAAAATATATCCAGGTTACTCTGAT
GACTCAACTGTACCGAATGACAGTCTTACACCTACATTTGCGGCAGCAGC
TCTGTTTATAAATAATGCTAGATGGGATGGTGTCCCTTTTCTCATGAAGG
CTGGAAAAGCTCTCCATACGAGGCGGGCAGAGATCAGAGTTCAGTTCAGA
CATGTTCCAGGTAATTTGTACAAGCAGAATTTTGGAACTGATTTAGACAA
GGCAACAAATGAGCTTGTGCTACGTGTGCAACCTGATGAAGCCATTTACC
TGAAGATCAATAATAAAGTTCCTGGTCTTGGAATGAGATTAGATCGCAGT
GACCTTAATTTGCTCTATCGAGCAAGGTATCCAAAAGAAATCCCAGATGC
ATATGAGAGATTGCTCTTAGATGCTATAGCTGGTGAGCGAAGGTTGTTCA
TTAGAAGTGATGAGCTGGATGCTGCTTGGTCACTGTTTACACCATTGTTG
AGGGAACTTGAAGAAAAAAAGATTTTTCCAGAGCTCTACCCTTATGGGAG
CAGAGGACCAGTTGGAGCACATTATCTTGCTGCTAAGTACAATGTTCGAT
GGGGTGATCTCAGTGGTGAAGACTTGTAA
back to top

protein sequence of Tc01v2_p016290.1

>Tc01v2_p016290.1 ID=Tc01v2_p016290.1|Name=Tc01v2_p016290.1|organism=Theobroma cacao|type=polypeptide|length=593bp
MATHFSPCSSSSSSSSSLTFSSEFTVCKPRRYCFSKWVSQVHPRIHARNH
FRIKSSNGHPPNAVSMQDGLFGLGMDGTPLAEGIKPEEQEIFFDLSDSEK
VQSTLSITVVGASGDLAKKKIFPALFALYYEDCLPENFMVFGYARTKLTD
EELRNVISGTLTCRIDKRANCEDKMEQFLKRCFYHSGQYDSEEHFAELDS
KLKEKEAGKLSNRLFYLSIPPNIFVDVVRCVSYKASAVNGWTRVIVEKPF
GRDSESSAELTRCLKQYLTEDQIFRIDHYLGKELVENLSVLRFSNLVFEP
LWSRNYIRNVQLIFSEDFGTEGRGGYFDNYGIIRDIMQNHLLQILALFAM
ETPVSLEAEDIRNEKVKVLRSMRPLQLEDVIVGQYKGHNKGGKIYPGYSD
DSTVPNDSLTPTFAAAALFINNARWDGVPFLMKAGKALHTRRAEIRVQFR
HVPGNLYKQNFGTDLDKATNELVLRVQPDEAIYLKINNKVPGLGMRLDRS
DLNLLYRARYPKEIPDAYERLLLDAIAGERRLFIRSDELDAAWSLFTPLL
RELEEKKIFPELYPYGSRGPVGAHYLAAKYNVRWGDLSGEDL*
back to top