Tc01v2_t015920.1

Overview
NameTc01v2_t015920.1
Unique NameTc01v2_t015920.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1218
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 19 ESTs, 32 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
Productexopolygalacturonase
NotePolygalacturonase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18612414
GenbankXM_018119204.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g015920Tc01v2_g015920Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p015920.1Tc01v2_p015920.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto36530auto36530Theobroma cacaoexon
exon-auto36531auto36531Theobroma cacaoexon
exon-auto36532auto36532Theobroma cacaoexon
exon-auto36533auto36533Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto36534auto36534Theobroma cacaoCDS
CDS-auto36535auto36535Theobroma cacaoCDS
CDS-auto36536auto36536Theobroma cacaoCDS
CDS-auto36537auto36537Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t015920.1 ID=Tc01v2_t015920.1|Name=Tc01v2_t015920.1|organism=Theobroma cacao|type=mRNA|length=1218bp
ATGGCTGTACTGTTGAATATTCCAGTTCTATCAATATTATTACTTTTGTT
CACTACTTCAATCCCCAAAGCCCAATCTACCGTTGTTGATGTAGTTGCCA
AATATGGCGCGAAGGCTGACGAGAAGACGGATTTGAGCACTCCTTTGCTG
AATGCTTGGAAAGAAGCATGTGCATCGACAACTCCAAGTAAGATTGTAAT
TCCGAAAGGGACGTACAGATTGAGCCGAGCAAGCCTGGATGGTCCTTGCA
AATCAGCTATTGAACTTCAGGTTAGTGGCATCATAAAGGCTCCGGCAGAT
CCTAGCGCTTTCAAGGACCCTAATTGGGTTGTCTTCAACCACGTTGATCA
TCTTACAATATCTGGCGGTGGAGTTTTTGATGGCCAAGGAGCCGCTGTTT
GGGGCAAGAACAATTGCGCTAAGAACAAATATTGCGCCGCACTTCCCATT
AATTTAAGGTTCAATTACGTCAGCAACGCCATTGTACAAGGCATAACTAC
CAAGGACAGCAAACAGTTCCAGGTTAATGTTTTGGGATGCCGAAACTTTA
CCTTCCAACATTTCACTGTCTCCGCTCCGGAAAACAGCATAAACACGGAT
GGAATCCATATTGGGCGATCGAATGGGGTCAAGGTTCTTGACACAAACAT
TAAAACCGGTGATGATTGTGTCTCCTTGGGTGATGGTAGCAAGAATGTGA
TCGTCGAAAGAGTAACCTGCGGTCCAGGACATGGCATCAGTGTGGGCAGT
CTTGGAAAGTTCAATGATGAAGAACCAGTGAGTGGAATTTTTGTCAGGAA
TTGCACCCTCAGTAACACAATGAATGGTGTTAGGGTCAAAACTTGGCCAG
ACTCACATCCTGGCTCAGCAACGGATATGCATTTTGAGGATATTATCTTG
AATAATGTCGGCAATCCTATCCTCATTGATCAGGAATACTGCCCATGGAA
CCTATGCAATTTAAAGGTTCCATCGCGTATTAAACTCAGCAACATTAGCT
TCAAGAAAATTCGGGGCACTTCTTCAACTCAGCAAGCTGTCGGGCTTGTT
TGCAGCCGCGGTTTGCCATGCGATCGTGTGGAACTCGCCGACATTGACAT
CACCTACAAAGGACCTGGAGGACCTGCAACATCCGAATGTACCAATGTGA
AACCCAGAACTTCTGGCAAACAGAACCCACCTGCCTGTTCCAGCCCTGCC
AAGCGTACCGGTGCGTAA
back to top

protein sequence of Tc01v2_p015920.1

>Tc01v2_p015920.1 ID=Tc01v2_p015920.1|Name=Tc01v2_p015920.1|organism=Theobroma cacao|type=polypeptide|length=406bp
MAVLLNIPVLSILLLLFTTSIPKAQSTVVDVVAKYGAKADEKTDLSTPLL
NAWKEACASTTPSKIVIPKGTYRLSRASLDGPCKSAIELQVSGIIKAPAD
PSAFKDPNWVVFNHVDHLTISGGGVFDGQGAAVWGKNNCAKNKYCAALPI
NLRFNYVSNAIVQGITTKDSKQFQVNVLGCRNFTFQHFTVSAPENSINTD
GIHIGRSNGVKVLDTNIKTGDDCVSLGDGSKNVIVERVTCGPGHGISVGS
LGKFNDEEPVSGIFVRNCTLSNTMNGVRVKTWPDSHPGSATDMHFEDIIL
NNVGNPILIDQEYCPWNLCNLKVPSRIKLSNISFKKIRGTSSTQQAVGLV
CSRGLPCDRVELADIDITYKGPGGPATSECTNVKPRTSGKQNPPACSSPA
KRTGA*
back to top