|
|
Properties
| Property Name | Value |
|---|
| Model evidence | Supporting evidence includes similarity to: 2 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns |
| Product | E3 ubiquitin-protein ligase COP1, transcript variant X3 |
| Note | E3 ubiquitin-protein ligase COP1 |
Cross References
External references for this mRNA
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Tc01v2_t015410.1 ID=Tc01v2_t015410.1|Name=Tc01v2_t015410.1|organism=Theobroma cacao|type=mRNA|length=1929bp
ATGGAGGAATTCTCAACTGGCACCGAGCCGCGAGTGCCGGCGGTGAAGCC
GGACTCTAACCCATCTTCCTTCGAGGAAGTTCCGCCGCTGCTCGAAGCAG
CCACTGACGTCACCGCCGCCGCTGCTGTTGAAGTTGCGGAGGTGGACAAG
GACTTGTCGTGTCCGATTTGTATGCAGATAATTAAGGACGCCTTTCTAAC
GTCTTGCGGCCACAGCTTTTGCTACATGTGTATTATTACTCATCTTCGAA
ACAAGAGCGATTGCCCTTGTTGCTCTCAATTTCTCACTAATAATCAGCTT
TTCCCTAACTTTTTGCTCGATAAGCTATTGAAGAAGACTTCATCTCGTCA
AATATCAAAAACTGCATCCCCTGTGGAACAGTTTCGTCAGGCATTACAGC
AGGGTTATGAAGTTTCAATTAAGGAACTGGACAACCTCTTGTCCCTCCTC
GCAGAGAAGAAGAGAAAAATGGAACAGGAAGAAGCTGAGAGAAATATGCA
AATACTGCTGGATTTCTTAAACTGCTTGCGGAAACAAAAAGTTGATGAAC
TGAATGAGGTACAATCTGATCTGCAGTTTATTAAAGAGGATATAAATTCT
GTGGAAAGACATAGAATAGATTTGTATCGTGCAAGAGATAGGTACTCTGT
GAAATTGCGGATGCTTGGAGATGATTCTGGCACAGGAAAGCCATGGCCTT
CATCCATAGACAAGAACAGTAGTGGAATTGTCTCTAGTTCCCTTAATGTC
AGAGGAGGGATGTCTGCAGGATATCTTCAAAACAAGAAAATAGATGGAAA
GGCTCAGGTGAGTGGCCATGGACCTCAGAGAAAGGATGCCTTAAGTGGAG
CAGACTCACAAGGTTTCAATCAATCTGGTCTGTCTATTGCAAGAAAAAAG
CGGGTTCATGTCCAGTTCAATGACCTACAAGAGTGTTACCTGCAAAAGCG
ACGTCAGTCGGCAAACCAACTACATGTTAAACAGGAAAGTGATAAAAATG
TCATTCACAGAGAGGGTTATAATGCAGGTCTTGCAGATTTTCAGTCAGTG
CTGAGTACTTTTACTCGGTACAGTCGACTTAGAGTTATTGCGGAACTGAG
GCTTGGGGATATCTTTCATTCAGCCAATATAGTATCAAGCATAGAATTTA
ATCGTGATGATGAGTTGTTTGCTACTGCTGGAGTGTCTCGGCGCATTAAG
GTTTTTGATTTCTCTATGGTCCTAAACGATCGAGCAGATGTACACTGTCC
TGTTGTGGAGATGTCAACACGTTCTAAACTTAGTTGCTTGAGTTGGAACA
AGTATTCAAAGAATCATATAGCTAGTAGTGATTATGAGGGAATAGTAACC
GTGTGGGATGTAAATACCCGTCAGAGTCTGATGGAATATGAAGAACATGA
AAAACGAGCATGGAGTGTTGATTTCTCACGGACAGAACCCTCAATGCTTG
TATCTGGTAGTGATGATTGCAAGGTGAAAGTTTGGTGCACAAAGCAGGAA
GCCAGTGTTCTTAATATTGACATGAAAGCCAATATATGTTGCGTCAAGTA
TAATCCTGGATCTAGCAATTACATTGCGGTTGGTTCAGCAGACCATCACA
TCCATTATTATGATTTAAGAAACATCAGTAGTCCACTCCATGTGTTCAGT
GGGCACAAGAAAGCTGTCTCGTATGTGAAATTCTTGTCTGAAAATGAACT
TGCTTCTGCCTCTACAGACAGCACACTAAGATTGTGGGATGTAAAGGAGA
GCTTGCCGGAAATCTCGAAACCTGTAACATGGCATAGATTTGGTTCACAG
GACATGGATGATGCAGATGAAGACGCTGGATCGCACTTCATCAGTGCGGT
ATGCTGGAAGAGTGATAGCCCTACCATGCTAACTGCTAACAGTCAGGGAA
CGATAAAAGTTCTCGTCCTTGCGGCTTGA back to topprotein sequence of Tc01v2_p015410.1 >Tc01v2_p015410.1 ID=Tc01v2_p015410.1|Name=Tc01v2_p015410.1|organism=Theobroma cacao|type=polypeptide|length=643bp
MEEFSTGTEPRVPAVKPDSNPSSFEEVPPLLEAATDVTAAAAVEVAEVDK
DLSCPICMQIIKDAFLTSCGHSFCYMCIITHLRNKSDCPCCSQFLTNNQL
FPNFLLDKLLKKTSSRQISKTASPVEQFRQALQQGYEVSIKELDNLLSLL
AEKKRKMEQEEAERNMQILLDFLNCLRKQKVDELNEVQSDLQFIKEDINS
VERHRIDLYRARDRYSVKLRMLGDDSGTGKPWPSSIDKNSSGIVSSSLNV
RGGMSAGYLQNKKIDGKAQVSGHGPQRKDALSGADSQGFNQSGLSIARKK
RVHVQFNDLQECYLQKRRQSANQLHVKQESDKNVIHREGYNAGLADFQSV
LSTFTRYSRLRVIAELRLGDIFHSANIVSSIEFNRDDELFATAGVSRRIK
VFDFSMVLNDRADVHCPVVEMSTRSKLSCLSWNKYSKNHIASSDYEGIVT
VWDVNTRQSLMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVKVWCTKQE
ASVLNIDMKANICCVKYNPGSSNYIAVGSADHHIHYYDLRNISSPLHVFS
GHKKAVSYVKFLSENELASASTDSTLRLWDVKESLPEISKPVTWHRFGSQ
DMDDADEDAGSHFISAVCWKSDSPTMLTANSQGTIKVLVLAA* back to top
|