Tc01v2_t014980.1

Overview
NameTc01v2_t014980.1
Unique NameTc01v2_t014980.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length975
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
Productcell differentiation protein RCD1 homolog
NoteCell differentiation, Rcd1-like protein, putative
Cross References
External references for this mRNA
DatabaseAccession
GeneID18612308
GenbankXM_007049040.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g014980Tc01v2_g014980Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p014980.1Tc01v2_p014980.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto33838auto33838Theobroma cacaoexon
exon-auto33839auto33839Theobroma cacaoexon
exon-auto33840auto33840Theobroma cacaoexon
exon-auto33841auto33841Theobroma cacaoexon
exon-auto33842auto33842Theobroma cacaoexon
exon-auto33843auto33843Theobroma cacaoexon
exon-auto33844auto33844Theobroma cacaoexon
exon-auto33845auto33845Theobroma cacaoexon
exon-auto33846auto33846Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto33847auto33847Theobroma cacaoCDS
CDS-auto33848auto33848Theobroma cacaoCDS
CDS-auto33849auto33849Theobroma cacaoCDS
CDS-auto33850auto33850Theobroma cacaoCDS
CDS-auto33851auto33851Theobroma cacaoCDS
CDS-auto33852auto33852Theobroma cacaoCDS
CDS-auto33853auto33853Theobroma cacaoCDS
CDS-auto33854auto33854Theobroma cacaoCDS
CDS-auto33855auto33855Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t014980.1 ID=Tc01v2_t014980.1|Name=Tc01v2_t014980.1|organism=Theobroma cacao|type=mRNA|length=975bp
ATGGCCAACGTCCCAGAAGAATCCCCATTGGGAGGCCCATCAGCTAGAGG
AGCGGGTTCGAGTGCGGCGGCTCCAACCAACAACCCTTCTTCTGCTCCTC
ATGATGGAAACCTCTCTGAGATCACTCGTTTGATTCGAGGGCTTAATTCT
GAAAAAACCCGAAAGGAGTCTCTTGACCTTCTTTGCAAGAATTATTTGAA
AGTTTGTGACGATTTGGCAATCTTGTTATGGAATTCTTTCGGTACCATGA
GAGCACTTGTAGAGGAAGTAACTTCAGTTTACCGTCCACTATCATCCACC
AGCCTTTCAGAAAGGGTAGCAGCTCAAGTTTGCAATGCTATTGCGCTTCT
TCAGGCTGTAGCTGCTCACCCCGAAACAAGGATGCCATTTGTCAAAGCTT
ACATACCAGTCTATCTTCAGGCCTTCCTGAACACTATGAACCGTGAAAAG
CCCTATGATTCTCTAAGGCTTAGCAGCTTAGTTGTCATCGGTTCCCTAGT
GAAGGTTGATGATGCAGAAGTGGTTGATTTCCTTCTTGTTTCTCAAACAT
TTCCTAGTTGCCTGCGCTGCATGGAGGTTGGCAGCACATTATCAAAAACA
GTTGCCACATTTATAATTCACAGGATTTTACTAAATGAGCAAGGGCTGCA
CTATTGTTTGGTTCCTGCGGATCGATTTTTCGCGCTAAACAATGCATTGG
CAATAATGGTTGAAAGGCTTGGTGAAGAAGAAGAAGGGCATCGCCCACGA
CTGCTAAGAAACATCATTTCTTGTTATCTCAGGCTGTCAGACAACGACAG
GGCACGTGCCTATTTCTCAGGTTACATTCCTCCCAAGTTAGTAGATGACA
CATATATTGGTATCCTTGAACGTGACCAGGTAGCCCATAGTAATCTACAA
AAATTGATTTCCAAATTAAAAGCCAGCCAGAGGTCTAGAACACAACCAAC
CGGCCACTTATCGGGGCCTTTATGA
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protein sequence of Tc01v2_p014980.1

>Tc01v2_p014980.1 ID=Tc01v2_p014980.1|Name=Tc01v2_p014980.1|organism=Theobroma cacao|type=polypeptide|length=325bp
MANVPEESPLGGPSARGAGSSAAAPTNNPSSAPHDGNLSEITRLIRGLNS
EKTRKESLDLLCKNYLKVCDDLAILLWNSFGTMRALVEEVTSVYRPLSST
SLSERVAAQVCNAIALLQAVAAHPETRMPFVKAYIPVYLQAFLNTMNREK
PYDSLRLSSLVVIGSLVKVDDAEVVDFLLVSQTFPSCLRCMEVGSTLSKT
VATFIIHRILLNEQGLHYCLVPADRFFALNNALAIMVERLGEEEEGHRPR
LLRNIISCYLRLSDNDRARAYFSGYIPPKLVDDTYIGILERDQVAHSNLQ
KLISKLKASQRSRTQPTGHLSGPL*
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