Tc01v2_t014560.2

Overview
NameTc01v2_t014560.2
Unique NameTc01v2_t014560.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1548
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 12 ESTs, 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productgamma aminobutyrate transaminase 3, chloroplastic, transcript variant X1
NoteGamma aminobutyrate transaminase 3, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18612261
GenbankXM_018125004.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g014560Tc01v2_g014560Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p014560.2Tc01v2_p014560.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto32517auto32517Theobroma cacaoexon
exon-auto32518auto32518Theobroma cacaoexon
exon-auto32519auto32519Theobroma cacaoexon
exon-auto32520auto32520Theobroma cacaoexon
exon-auto32521auto32521Theobroma cacaoexon
exon-auto32522auto32522Theobroma cacaoexon
exon-auto32523auto32523Theobroma cacaoexon
exon-auto32524auto32524Theobroma cacaoexon
exon-auto32525auto32525Theobroma cacaoexon
exon-auto32526auto32526Theobroma cacaoexon
exon-auto32527auto32527Theobroma cacaoexon
exon-auto32528auto32528Theobroma cacaoexon
exon-auto32529auto32529Theobroma cacaoexon
exon-auto32530auto32530Theobroma cacaoexon
exon-auto32531auto32531Theobroma cacaoexon
exon-auto32532auto32532Theobroma cacaoexon
exon-auto32533auto32533Theobroma cacaoexon
exon-auto32534auto32534Theobroma cacaoexon
exon-auto32535auto32535Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto32536auto32536Theobroma cacaoCDS
CDS-auto32537auto32537Theobroma cacaoCDS
CDS-auto32538auto32538Theobroma cacaoCDS
CDS-auto32539auto32539Theobroma cacaoCDS
CDS-auto32540auto32540Theobroma cacaoCDS
CDS-auto32541auto32541Theobroma cacaoCDS
CDS-auto32542auto32542Theobroma cacaoCDS
CDS-auto32543auto32543Theobroma cacaoCDS
CDS-auto32544auto32544Theobroma cacaoCDS
CDS-auto32545auto32545Theobroma cacaoCDS
CDS-auto32546auto32546Theobroma cacaoCDS
CDS-auto32547auto32547Theobroma cacaoCDS
CDS-auto32548auto32548Theobroma cacaoCDS
CDS-auto32549auto32549Theobroma cacaoCDS
CDS-auto32550auto32550Theobroma cacaoCDS
CDS-auto32551auto32551Theobroma cacaoCDS
CDS-auto32552auto32552Theobroma cacaoCDS
CDS-auto32553auto32553Theobroma cacaoCDS
CDS-auto32554auto32554Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t014560.2 ID=Tc01v2_t014560.2|Name=Tc01v2_t014560.2|organism=Theobroma cacao|type=mRNA|length=1548bp
ATGGTGCCCAACAGTTTCCTTCGATCAACTCTCAAACTCCAGCTTGGTTC
ATATATAAAAAATGCTGCTGCATACAGAAGTTTCATGGACCAATCACCTA
AGGGTCCATTACTGGCCAGATTATATAGTACAGAGCCATCTTTGCAGAAG
GAAGATTCAGATTTGAAGGATGGTAATGGGTTTAAGGGGCATGATATGCT
GGCCCCATTCACAGCTGGGTGGCAGACCACTGACTTGCATCCTCTGGTTA
TTGAAAAGTCTGAGGGTAGCTATGTTTATGATGTCAATGGGAGAAAGTAT
CTGGATACTCTGGCTGGTCTATGGTGTACAGCATTAGGGGGAAATGAAGC
TCGACTTGTGGCTGCAGCAACTGATCAATTGAATAAATTGCCATTTTATC
ATTCCTTTTGGAATCGTACCACAAAACCATCACTGGATCTTGCAAAGGAA
CTTCTTGGAACTTTTACTGCAAGGAAAATGGCAAAAGTCTTCTTTACAAA
CAGTGGATCTGAAGCAAATGATACTCAGGTGAAGCTCGTTTGGTATTATA
ATAATGCACTTGGAAGACCAAATAAGAAGAAATTTATTGCTCGGGCAAAA
TCATACCACGGTTCAACTTTGATATCGGCTAGTCTTTCTGGACTTCCTGC
TCTACATCAAAAGTTTGACCTGCCAGCACCATTTGTGTTGCACACTGACT
GCCCTCATTATTGGCGCTATCATCTACCAGGTGAGACGGAGGAGGAGTTC
TCAACCAGATTAGCCAATAATTTAGAGAATCTTATTCTGAAAGAGGGTCC
AGAGACGATTGCTGCATTTATTGCTGAGCCAGTGATGGGGGCAGGAGGTG
TTATACTTCCTCCTGCTACTTATTTTGAAAAGATACAAGCTGTTGTAAAA
AAATACGACATACTTTTTATTGCAGATGAGGTTATTTGTGCTTTTGGAAG
GCTTGGGACAATGTTTGGATGTGACAAGTACAATATTAAACCAGATCTTG
TTTCATTAGCAAAGGCCCTTTCTTCAGCATATATGCCCATTGGTGCAGTC
ATGGTGAGCCCTGAAGTTTCAGCAGTCATTTATTCTCAAAGCAACAAACT
TGGTTCTTTCTCTCATGGATTCACCTACTCTGGGCACCCTGTATCCTGTG
CTGTCGCAATTGAAGCACTGAAGCTCTACAAGGAGAGAAATATTGTTGAG
AAAGTGAAGCGTATTTCTCCAAGGTTTCAAGATGGTCTCAAATCCTTTTC
TGATAGTCCTATTGTTGGAGAGATCCGAGGTACTGGCTTAATTCTTGGTA
CAGAGTTTACGGACAGCAAGTCACCTAACGATCCATTCCCTCCTGAATGG
GGAATTGGTGCATATTTTGGAGCACAATGTGAGAAGCATGGAATGCTAGT
ACGTGTTGCAGGTGACAACATAATGATGTCTCCATCCTTTATAATTACTC
CTGAAGAGGTTGATGAATTAATAAGCAAATATGGGAAAGCATTGAAGGCA
ACTGAAGAGAGGGTGAAGGAACTCAAGTCCCAGCAGAAGAAACAGTGA
back to top

protein sequence of Tc01v2_p014560.2

>Tc01v2_p014560.2 ID=Tc01v2_p014560.2|Name=Tc01v2_p014560.2|organism=Theobroma cacao|type=polypeptide|length=516bp
MVPNSFLRSTLKLQLGSYIKNAAAYRSFMDQSPKGPLLARLYSTEPSLQK
EDSDLKDGNGFKGHDMLAPFTAGWQTTDLHPLVIEKSEGSYVYDVNGRKY
LDTLAGLWCTALGGNEARLVAAATDQLNKLPFYHSFWNRTTKPSLDLAKE
LLGTFTARKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARAK
SYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRYHLPGETEEEF
STRLANNLENLILKEGPETIAAFIAEPVMGAGGVILPPATYFEKIQAVVK
KYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVSLAKALSSAYMPIGAV
MVSPEVSAVIYSQSNKLGSFSHGFTYSGHPVSCAVAIEALKLYKERNIVE
KVKRISPRFQDGLKSFSDSPIVGEIRGTGLILGTEFTDSKSPNDPFPPEW
GIGAYFGAQCEKHGMLVRVAGDNIMMSPSFIITPEEVDELISKYGKALKA
TEERVKELKSQQKKQ*
back to top