Tc01v2_t014200.1

Overview
NameTc01v2_t014200.1
Unique NameTc01v2_t014200.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2757
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Productanaphase-promoting complex subunit 5
NoteAnaphase-promoting complex subunit 5
Cross References
External references for this mRNA
DatabaseAccession
GeneID18612222
GenbankXM_007048896.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g014200Tc01v2_g014200Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p014200.1Tc01v2_p014200.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto31658auto31658Theobroma cacaoexon
exon-auto31659auto31659Theobroma cacaoexon
exon-auto31660auto31660Theobroma cacaoexon
exon-auto31661auto31661Theobroma cacaoexon
exon-auto31662auto31662Theobroma cacaoexon
exon-auto31663auto31663Theobroma cacaoexon
exon-auto31664auto31664Theobroma cacaoexon
exon-auto31665auto31665Theobroma cacaoexon
exon-auto31666auto31666Theobroma cacaoexon
exon-auto31667auto31667Theobroma cacaoexon
exon-auto31668auto31668Theobroma cacaoexon
exon-auto31669auto31669Theobroma cacaoexon
exon-auto31670auto31670Theobroma cacaoexon
exon-auto31671auto31671Theobroma cacaoexon
exon-auto31672auto31672Theobroma cacaoexon
exon-auto31673auto31673Theobroma cacaoexon
exon-auto31674auto31674Theobroma cacaoexon
exon-auto31675auto31675Theobroma cacaoexon
exon-auto31676auto31676Theobroma cacaoexon
exon-auto31677auto31677Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto31678auto31678Theobroma cacaoCDS
CDS-auto31679auto31679Theobroma cacaoCDS
CDS-auto31680auto31680Theobroma cacaoCDS
CDS-auto31681auto31681Theobroma cacaoCDS
CDS-auto31682auto31682Theobroma cacaoCDS
CDS-auto31683auto31683Theobroma cacaoCDS
CDS-auto31684auto31684Theobroma cacaoCDS
CDS-auto31685auto31685Theobroma cacaoCDS
CDS-auto31686auto31686Theobroma cacaoCDS
CDS-auto31687auto31687Theobroma cacaoCDS
CDS-auto31688auto31688Theobroma cacaoCDS
CDS-auto31689auto31689Theobroma cacaoCDS
CDS-auto31690auto31690Theobroma cacaoCDS
CDS-auto31691auto31691Theobroma cacaoCDS
CDS-auto31692auto31692Theobroma cacaoCDS
CDS-auto31693auto31693Theobroma cacaoCDS
CDS-auto31694auto31694Theobroma cacaoCDS
CDS-auto31695auto31695Theobroma cacaoCDS
CDS-auto31696auto31696Theobroma cacaoCDS
CDS-auto31697auto31697Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t014200.1 ID=Tc01v2_t014200.1|Name=Tc01v2_t014200.1|organism=Theobroma cacao|type=mRNA|length=2757bp
ATGGCAGGAGCATTAAAACTACCGAGTGCCTTTGCGATAACCCCACACAA
AGTTTCTCTCTGCATTTTGGTTCAGATCTACGCTTCCCCTTCTCAAGTTT
CCGTCCCTTTCCCTTTCTCCTCCGTTTCTCAACACAACCGCCTGGGCTTG
TATTTGTTAGCTCTCACCAAGTCGTGTGATGACATTTTGGAGCCAAAATT
AGATCAACTCATTAGCCAATTGAGGGAGATTGGTGGTTTGTTGGATCATT
GGTTAACTGATCATTTAACTAGTCGGCTATCGTCTTTATCATCACCTGAT
GATTTATTCAATTTCTTTAACGATATGCGAGGAATACTTGGAGGACCTGA
TTCAGGAGTTATGGAAGATGACCAGGTCATTTTGGACCCAAACAGTAACT
TGGGGATGTTTCTTCGCCGTTGCATACTTGCTTTCAACCTCTTAACTTTT
GAGGGTATCTGCCATCTTTTGACAAATATAGGGATCTATTGTAAGGAAGC
CATTTCAAGTTGTTCATCATATGAGTTGCGCCGGTTAGACGATTCTGGTA
ATGATTTGGAATCTTTATCTGAGTATGAGAACATGGATCTCAATCTTGTT
TTTAAAAAAATAAATGAAGAAATGGAAGCAAGGAAAAGAGCCACTGAACA
AGTTTCTTTTCATCTTCATCTTCCGAAGGAGCTATCAACATTGGTTGAAG
ATATTGAGGTTTTTGCTGACCCTAAATCAGAACACAATGACAAAGGCAGA
GAATCTTCTTCATATGCCTCTTCTGGCGATTTACTCAGAGATTTTGATCC
CAATGGTGGGGTATTTTTGCGCACCAATTGGCAAATACAAGGCTACTTGA
CAGAGCAAGCTGATGCGATTGAAAAGCATGGCAGTTCTTTCACTTTAAAT
GCCTTTGAACTGACTTTAAGGCAACTTCAGAAGTTGGCCCCTGAGCTACA
TCGTGTTCACTTTTTGCGTTACTTGAATAGCCTGTATCATGATGACTATT
TTTCTGCATTGGAAAATCTTCATCGTTACTTTGATTACAGTGCAGGAATT
GAGGGATTTGATTTTGTTCCTCCTACTGGTTGCAATAGTTTTGGAAGATA
TGAGATTGCACTGTTATGTTTGGGGATGATGCACTTTCACTTTGGGCATC
CTAAGCAGGCTTTGGAGGTCCTTACTGAAGCTGTTCGTGTCTCCCAACAG
CACAGCAATGATACTTGTCTGGCATACACCCTAGCAGCTATCTCCAACTT
GTTGTCTGAAATTGGTTTCTCAACCACCAGTGGAATACTTGGATCGCCAT
TCTCTCCGATGACCAGTGTAGGCACTTCATTGTCTGTCCAGCAACAACTG
TTTGTTCTCTTGAAAGGATCTCTAAAGAGAGCAGAGAGTTTAAAATTGAA
ACAATTGGTAGCTGCCAATCATCTTTCAATGGCTAAATTTGATTTGACGC
ATGTGCAGAGACCTCTGCTATCATTTGGTCCCAAGGCTTCCATGAAGCTT
AGGACATGCCCAATTAGTGTTTGCAAGGAACTAAGGTTAGGTTATCACTT
AATCAGTGAATTTTGTTGCGAAGGCTCTACAATGACAACAGATGGTGCTT
TTAGTACTGCATGGCTTAAGAACTTGCAAAAGCCCATGGGTTCGTTAGTG
CTGTCTCAAGATAATAGTTCTAGGAACAATTCTAATCCTTTCCTATTCTG
TACACAACCAAGTTCAATTCCTGGATCTGTTCTGCAGTTAGTAGGTTCTT
CATATTTACATCGTGCTACTGCATGGGAGATATATGGAAGCGCCCCACTT
GCTCGAGTGAATGCTTTAGTTTATGCAACTTGCTTCGCTGATGCTTCAAG
TTCATCTGATGCAGCATTAGTATATGTGAAGCTTGTACAACATCTGGCAG
TATTTAAAGGCTACAAAGAGGCTTTTGCTGCTCTTAAAATTGCGGAAGAG
AAGTTTTTATGTGTCTCCAAATCATGGATATTGATCCTGAAGTTACAGCT
GCTCCATGAGCGTGCATTACATCGAGGACATCTCAAGCTTGCCCAACAAG
TATGCGATGAGCTTGGAGTTTTGGCGTCATCTGTAACTGCTGTGGACATG
GATCTGAAGACAGAGGCAAGCCTTCGCCATGCTCGTACATTGCTTGCGGC
AAAGCAGTTTAGCCAGGCAGCAGCTGTGGCACACTCCCTCTTTTGCATGT
GCTACAAATTCAATCTGCAAGTTGAAAGTGCATCTGTTCTTCTTCTGCTT
GCTGAAATTCACATGAAATCAGGAAATGCTGTTGTGGGCCTTCCATATGC
ATTAGCGAGCCTCTCATATTGTCAGTCATTTAACTTGGATCTACTTAGAG
CATCAGCAACCCTTACACTGGCTGAGTTATGGCTTTCGCTTGGATCAAAT
CATACAAAGACAGCTTTAAGTCTTATACATGGTGCTTTTCCAATGATTCT
TGGCCATGGAGGTTTGGAGCTCAGTGGTCGGGCCTATATTACAGAAGCAA
AATGTTATCTCTCAGATCCAAACTTCTCAGTTTCTGACAATCCTGAGGTT
GTGCTGGATCCCTTAAGGCAAGCTTCAGATGAGTTGCAAGCTTTGGAGTA
TCATGAATTAGCAGCTGAAGCTTTCTACTTGATGGCCATCGTATTTGACA
AGCTGGGGCAGCTAGAAAAGAGGGAAGAAGCCGCAGCTTCATTCAAGAAT
CATATTGTGGCACTTGAGAATTCTCAAAATGTGGAAGATCTTCTGTTAAG
TGTGTAA
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protein sequence of Tc01v2_p014200.1

>Tc01v2_p014200.1 ID=Tc01v2_p014200.1|Name=Tc01v2_p014200.1|organism=Theobroma cacao|type=polypeptide|length=919bp
MAGALKLPSAFAITPHKVSLCILVQIYASPSQVSVPFPFSSVSQHNRLGL
YLLALTKSCDDILEPKLDQLISQLREIGGLLDHWLTDHLTSRLSSLSSPD
DLFNFFNDMRGILGGPDSGVMEDDQVILDPNSNLGMFLRRCILAFNLLTF
EGICHLLTNIGIYCKEAISSCSSYELRRLDDSGNDLESLSEYENMDLNLV
FKKINEEMEARKRATEQVSFHLHLPKELSTLVEDIEVFADPKSEHNDKGR
ESSSYASSGDLLRDFDPNGGVFLRTNWQIQGYLTEQADAIEKHGSSFTLN
AFELTLRQLQKLAPELHRVHFLRYLNSLYHDDYFSALENLHRYFDYSAGI
EGFDFVPPTGCNSFGRYEIALLCLGMMHFHFGHPKQALEVLTEAVRVSQQ
HSNDTCLAYTLAAISNLLSEIGFSTTSGILGSPFSPMTSVGTSLSVQQQL
FVLLKGSLKRAESLKLKQLVAANHLSMAKFDLTHVQRPLLSFGPKASMKL
RTCPISVCKELRLGYHLISEFCCEGSTMTTDGAFSTAWLKNLQKPMGSLV
LSQDNSSRNNSNPFLFCTQPSSIPGSVLQLVGSSYLHRATAWEIYGSAPL
ARVNALVYATCFADASSSSDAALVYVKLVQHLAVFKGYKEAFAALKIAEE
KFLCVSKSWILILKLQLLHERALHRGHLKLAQQVCDELGVLASSVTAVDM
DLKTEASLRHARTLLAAKQFSQAAAVAHSLFCMCYKFNLQVESASVLLLL
AEIHMKSGNAVVGLPYALASLSYCQSFNLDLLRASATLTLAELWLSLGSN
HTKTALSLIHGAFPMILGHGGLELSGRAYITEAKCYLSDPNFSVSDNPEV
VLDPLRQASDELQALEYHELAAEAFYLMAIVFDKLGQLEKREEAAASFKN
HIVALENSQNVEDLLLSV*
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