Tc01v2_t012440.1

Overview
NameTc01v2_t012440.1
Unique NameTc01v2_t012440.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length813
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 19 ESTs, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productextradiol ring-cleavage dioxygenase
NoteExtradiol ring-cleavage dioxygenase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18612007
GenbankXM_007048564.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g012440Tc01v2_g012440Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p012440.1Tc01v2_p012440.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto27682auto27682Theobroma cacaoexon
exon-auto27683auto27683Theobroma cacaoexon
exon-auto27684auto27684Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto27685auto27685Theobroma cacaoCDS
CDS-auto27686auto27686Theobroma cacaoCDS
CDS-auto27687auto27687Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t012440.1 ID=Tc01v2_t012440.1|Name=Tc01v2_t012440.1|organism=Theobroma cacao|type=mRNA|length=813bp
ATGATCAAAATGGCGTTGACGATGAAGGATACGTTCTATATATCACACGG
ATCGCCGACTCTGTCGATAGATGACTCGCTTCCGGCGAGGCACTTCTTGC
AGTCATGGAAGGACACGGTGTTTGGCCAAACACCCAAATCCATCCTCGTA
GTTTCTGGTCATTGGGACACTTCCTATCCCGCCGTCAACATGGTTCAGCG
CAATGATACCATCTATGACTTCTATGGTTTCCCCGACAAAATGTACAAGC
TGAAATATCCAGCACCAGGGGCTCCGGAGTTGGCGAAAAGAGTGAAGGAA
TTGCTTATGGCATCTGGTTTCAAGCGTGTTGACGAGGATAAAAAACGCGG
GCTTGACCATGGTGCTTGGGTTCCACTCATGCTCATGTACCCAGAGGCGG
ATATCCCAGTCTGCCAACTCTCTGTTCAGTCCAGAAGGGATGGTACTTAC
CATTACAACTTGGGAAAGGCTTTAGCCCCTCTCAAGGATGAAGGTGTTCT
CATCATTGGTTCTGGAGCCGCCACTCATAACTTGAGGGCACTAGGAAACT
TGAACGGTGCTGTTGTTCCTTGGGCTTCGGAGTTTGATACTTGGCTTAAA
GATGCTCTCCTTGAAGGAAGATATGAAGATGTGAACCACTTTCAAGAGAA
GGCACCATATGCAAAGATGGCTCACCCTTGGCCAGACCACTTCTATCCAT
TGCATGTAGCCATGGGCGCTGCTGGTGAAAGCTCAAAGGCAAAACTTATC
CATCAGAGCTGGGAACTTGGTTCTCTATCCTATGCTTCTTACCAGTTCAC
AGCAGCCAGCTGA
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protein sequence of Tc01v2_p012440.1

>Tc01v2_p012440.1 ID=Tc01v2_p012440.1|Name=Tc01v2_p012440.1|organism=Theobroma cacao|type=polypeptide|length=271bp
MIKMALTMKDTFYISHGSPTLSIDDSLPARHFLQSWKDTVFGQTPKSILV
VSGHWDTSYPAVNMVQRNDTIYDFYGFPDKMYKLKYPAPGAPELAKRVKE
LLMASGFKRVDEDKKRGLDHGAWVPLMLMYPEADIPVCQLSVQSRRDGTY
HYNLGKALAPLKDEGVLIIGSGAATHNLRALGNLNGAVVPWASEFDTWLK
DALLEGRYEDVNHFQEKAPYAKMAHPWPDHFYPLHVAMGAAGESSKAKLI
HQSWELGSLSYASYQFTAAS*
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