Tc01v2_t011560.1

Overview
NameTc01v2_t011560.1
Unique NameTc01v2_t011560.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1254
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 36 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productgibberellin 20 oxidase 1-B
NoteGibberellin 20 oxidase 1-B
Cross References
External references for this mRNA
DatabaseAccession
GeneID18611901
GenbankXM_007048384.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g011560Tc01v2_g011560Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p011560.1Tc01v2_p011560.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto24580auto24580Theobroma cacaoexon
exon-auto24581auto24581Theobroma cacaoexon
exon-auto24582auto24582Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto24583auto24583Theobroma cacaoCDS
CDS-auto24584auto24584Theobroma cacaoCDS
CDS-auto24585auto24585Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t011560.1 ID=Tc01v2_t011560.1|Name=Tc01v2_t011560.1|organism=Theobroma cacao|type=mRNA|length=1254bp
ATGCGTATATTGTGTTCTTGTTCCCTAGCACTCACTTTCTCTTTACCTTG
GTGTTCTTTAAGACAGCTTTGTCTTAATTTTGGCAAGACTCTCTTTTATG
AAATGTCTCCCTCTCTCCTAATGGATTCGAGTTCTTCAACCCTCCTTTTG
CGTCCATCCATTGAACCAAGAGCTGAGGATAATAATGTTGTTCTTTTTGA
CCCATCCAAGTTGCAAAAACAAGCAAACATACCCGCAGAATTCGTTTGGC
CGCATGTGGACCTGGTTCACACTCAGGAAGAGCTTAACGAGCCCTTGATA
GACTTGGAAGGGTTCATCAAAGGAGACGACGAGGCTACTTCCCATGCAGT
CGACCTCGTCAGGTCTGCCTGCTTGAACCATGGTTTCTTCCAAGTTACCA
ACCATGGTGTGGATGCAACTCTCATTCAAGCTGCGTACGAAGAAATTGAT
CCAGTGTTCAAGATGCCCCTTAACAAGAAGCTCAGTTTCCAGAGAAAGCC
TGGCGATTTCTCAGGTTTTTCCGCTGCCCATGCGGACCGTTTTTCGTCCA
AGTTGCCGTGGAAGGAAACATTTTCTTTCGGGTACCATGGAAATAACTCG
GACCCTGTCGTGGTTGATTATTTTAGGGCTGCGTTGGGGGAAGATTTTGA
ACACACCGGGTGGATTTACCAAAATTATTGTGAAAAAATGAGGGAATTGT
CTCTAGTCATATTTGAGCTGTTGGCAGTCAGCTTAGGAGTGGACCGTATG
CACTATCACAAATTTTTCGAAGATGGCAACTCAATAATGAGGTGTAACTA
CTATCCCCCCTGCAATAATTCTGGTCTCACCCTTGGCACCGGCCCTCATT
GCGACCCAACTTCCTTGACAATACTTCACCAAGACCAAGTTGGAGGGCTT
GAAGTTTTCGCGAATAACAAATGGCAAACAGTCCGACCTCGGCCAGATGC
CCTAGTCATTAACATTGGTGATACTTTCATGGCATTATGTAATGGGAGAT
ACAAGAGCTGCCTGCACAGGGCAGTGGTGAACAGCGAGAGAGTGAGGAGA
TCATTGGTTTACTTTGTGTGCCCCAAAGAGGACAAAGTGGTGAGACCCCC
GCAGGATCTTGTTTGCAGAGATGTGCCGAGACTGTACCCCGATTTCACAT
GGTCCGATCTCTTGGAGTTCACTCAAAAGCACTACCGAGCTGACGTCGAC
ACCCTCCAAAGCTTCTTCCCCTGGCTCCTCTCTTCCAAGCCTTCCAACTT
CTAG
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protein sequence of Tc01v2_p011560.1

>Tc01v2_p011560.1 ID=Tc01v2_p011560.1|Name=Tc01v2_p011560.1|organism=Theobroma cacao|type=polypeptide|length=418bp
MRILCSCSLALTFSLPWCSLRQLCLNFGKTLFYEMSPSLLMDSSSSTLLL
RPSIEPRAEDNNVVLFDPSKLQKQANIPAEFVWPHVDLVHTQEELNEPLI
DLEGFIKGDDEATSHAVDLVRSACLNHGFFQVTNHGVDATLIQAAYEEID
PVFKMPLNKKLSFQRKPGDFSGFSAAHADRFSSKLPWKETFSFGYHGNNS
DPVVVDYFRAALGEDFEHTGWIYQNYCEKMRELSLVIFELLAVSLGVDRM
HYHKFFEDGNSIMRCNYYPPCNNSGLTLGTGPHCDPTSLTILHQDQVGGL
EVFANNKWQTVRPRPDALVINIGDTFMALCNGRYKSCLHRAVVNSERVRR
SLVYFVCPKEDKVVRPPQDLVCRDVPRLYPDFTWSDLLEFTQKHYRADVD
TLQSFFPWLLSSKPSNF*
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