Tc01v2_t011410.1

Overview
NameTc01v2_t011410.1
Unique NameTc01v2_t011410.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1245
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
ProductSAL1 phosphatase, transcript variant X1
NoteSAL1 phosphatase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18611884
GenbankXM_018126777.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g011410Tc01v2_g011410Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p011410.1Tc01v2_p011410.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto24132auto24132Theobroma cacaoexon
exon-auto24133auto24133Theobroma cacaoexon
exon-auto24134auto24134Theobroma cacaoexon
exon-auto24135auto24135Theobroma cacaoexon
exon-auto24136auto24136Theobroma cacaoexon
exon-auto24137auto24137Theobroma cacaoexon
exon-auto24138auto24138Theobroma cacaoexon
exon-auto24139auto24139Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto24140auto24140Theobroma cacaoCDS
CDS-auto24141auto24141Theobroma cacaoCDS
CDS-auto24142auto24142Theobroma cacaoCDS
CDS-auto24143auto24143Theobroma cacaoCDS
CDS-auto24144auto24144Theobroma cacaoCDS
CDS-auto24145auto24145Theobroma cacaoCDS
CDS-auto24146auto24146Theobroma cacaoCDS
CDS-auto24147auto24147Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t011410.1 ID=Tc01v2_t011410.1|Name=Tc01v2_t011410.1|organism=Theobroma cacao|type=mRNA|length=1245bp
ATGTCCATAAATTGGTTGAGAGTTGTATTCCCCTCTATCATAAAACTACC
TCCTCCTCTTCCTCTCAGGTACTCGTCTCCTTCTTCTTGTTCTTGTTTTT
CTTCGGTGGTTGTGGCAATGTCTTATGATAAAGAGCTGACTGCTGCCAAG
AAAGCTGCCTCTCTCGCTGCTCGTCTCTGTCAGAAAGTGCAGAAGAGTTT
GCTTCAATCAGATGTTCAATCCAAAAATGATAGAAGTCCTGTAACAGTGG
CTGATTATGGCTCACAAGCACTGGTTAGCTTTGTGCTGCAGCAGGAATTT
CCGGCTGAATTCTCATTAGTTGCCGAGGAGGATTCTAAAGATCTTCGCAA
GGATGGTGCCCAGGAATTAGTAGACCGCATTACAAAACTTGTGAATGATT
CTCTAGCTAGTGATGAATCATACAGTGTTACTTTATCCACAGAAGATGTT
CTCAAGGCCATTGACAGTGGCAAATCTGAAGGTGGTTCCCAAGGTCGACA
CTGGGTTTTGGATCCTATAGATGGTACTAAAGGGTTTCTAAGAGGAGGTC
AATATGCAATAGCGTTGGCTTTGCTAGACAGAGGAAAAGTTGTCTTGGGT
GTGCTGGCTTGTCCTAATCTACCACTAACTCCCATCAATGATCAGCATTC
TCCAAATAATGAAGTTGGTTGTCTTTTCTTTGCTGAAGTTGGTGGAGGAT
CTTACATGCAGCCACTTGACAGTTCTTCAACGGTGAAGGTGCAAGTAAGT
GGCGTTGAAAATCCTGAAGAAGCATCATTCTTTGAGTCATATGAAGCAGC
ACATTCCATGCATGATTTATCTAGTTTAATTGCCCAAGTACTTCTCTCTC
TCTCTCTCTCTATATATATATATATATATGTATGTATGTATTTCCATGCA
TGTAATGTAACACTGAGATGTAAACAGAAACTCGGCGTCAAAGCACCACC
AGTTAGAATTGATAGCCAGGTAAAATACGGTGCTCTGTCCAGAGGAGATG
GAGCCATATATATGCGTCTACCTCATAAAGGGTATCGGGAGAAAATATGG
GATCATGCTGCCGGGTGTATTGTTGTGACTGAAGCTGGCGGTGTGGTCAT
GGATGCTGCAGGGAACCCTTTGGATTTTTCTAAGGGAAAGTTTCTTGATC
TGGACACAGGCATCATTGTTACCAATCAGAAGTTGATGCCAATACTCATT
AAGGCAGTTAGAGAATCCCTGGAGGAGAAAGCTTCACCCTTGTGA
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protein sequence of Tc01v2_p011410.1

>Tc01v2_p011410.1 ID=Tc01v2_p011410.1|Name=Tc01v2_p011410.1|organism=Theobroma cacao|type=polypeptide|length=415bp
MSINWLRVVFPSIIKLPPPLPLRYSSPSSCSCFSSVVVAMSYDKELTAAK
KAASLAARLCQKVQKSLLQSDVQSKNDRSPVTVADYGSQALVSFVLQQEF
PAEFSLVAEEDSKDLRKDGAQELVDRITKLVNDSLASDESYSVTLSTEDV
LKAIDSGKSEGGSQGRHWVLDPIDGTKGFLRGGQYAIALALLDRGKVVLG
VLACPNLPLTPINDQHSPNNEVGCLFFAEVGGGSYMQPLDSSSTVKVQVS
GVENPEEASFFESYEAAHSMHDLSSLIAQVLLSLSLSIYIYIYVCMYFHA
CNVTLRCKQKLGVKAPPVRIDSQVKYGALSRGDGAIYMRLPHKGYREKIW
DHAAGCIVVTEAGGVVMDAAGNPLDFSKGKFLDLDTGIIVTNQKLMPILI
KAVRESLEEKASPL*
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