Tc01v2_t010530.2

Overview
NameTc01v2_t010530.2
Unique NameTc01v2_t010530.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length942
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
Productserine/threonine-protein kinase ATG1t, transcript variant X2
NoteSerine/threonine-protein kinase ATG1t
Cross References
External references for this mRNA
DatabaseAccession
GeneID18611779
GenbankXM_007048211.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g010530Tc01v2_g010530Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p010530.2Tc01v2_p010530.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto22377auto22377Theobroma cacaoexon
exon-auto22378auto22378Theobroma cacaoexon
exon-auto22379auto22379Theobroma cacaoexon
exon-auto22380auto22380Theobroma cacaoexon
exon-auto22381auto22381Theobroma cacaoexon
exon-auto22382auto22382Theobroma cacaoexon
exon-auto22383auto22383Theobroma cacaoexon
exon-auto22384auto22384Theobroma cacaoexon
exon-auto22385auto22385Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto22386auto22386Theobroma cacaoCDS
CDS-auto22387auto22387Theobroma cacaoCDS
CDS-auto22388auto22388Theobroma cacaoCDS
CDS-auto22389auto22389Theobroma cacaoCDS
CDS-auto22390auto22390Theobroma cacaoCDS
CDS-auto22391auto22391Theobroma cacaoCDS
CDS-auto22392auto22392Theobroma cacaoCDS
CDS-auto22393auto22393Theobroma cacaoCDS
CDS-auto22394auto22394Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t010530.2 ID=Tc01v2_t010530.2|Name=Tc01v2_t010530.2|organism=Theobroma cacao|type=mRNA|length=942bp
ATGGAACCTGAAGCCATGTCCTGCCTGTCGGAACCACTGACAACCGGGGA
CTATATATTGAAATCAAAGCTGGGAGAAAGTTCTTTTTCCACAATTTGGA
AAGCAATGAGCAAATCAAGCGGAGAAGTAGTGGCAGTGAAGCAAGTTTGT
CTTTGCAAGCTTAGCAAACACCTCACCAACTGTTTGGATTGTGAGCTTAA
TTTTCTGTCCTCTGTCAACCACCCCAACATCATTCGCCTTCTCCACGTTT
TTCAGTTGGAAAGTTGTTTGTTCCTGGTCCTGGAGTTCTGTGCTGGAGGA
GACCTAGCCTCTTACATTCGGCATCATGGAAGAGTTCAAGAGAAAATAGC
TAGAAGATTTATGCAGCAACTTGGAGCTGGTTTGGAAGTTTTGCAGTCCC
ATCATATCATTCACAGAGACCTGAAACCAGAGAACATTCTACTGTCTGGC
TCCAAGGATGATTTGGTACTGAAGATAGCTGATTTTGGTCTTTCAAGACG
TGTAGATCCAGGCAAGTATGCTGAGACAGTATGTGGATCCCCATTGTATA
TGGCTCCAGAAGTACTACAATTTCAAAGATATGATGAGAAGGTTGACATG
TGGAGTCTTGGTGCAATTCTTTTTGAGCTTCTTAATGGTTACCTACCTTT
CCATGGTAGGACTAATGTTCAGCTACTTCAGAATATCAAATCATGTACAT
GCCTTCCGTTTTCGAAGCTCATTCTTCCAGGATTACATCCAGACTGTGTT
GACATATGTTCAAGACTTCTTTCTGTAAATCCAGTTCATCGCCTGTCCTT
TCAAGAATTCTATCAGCATAAGTTTTTAGAACAAAAAGAATGGGAAACTA
AAAGCAACTCTCATACTTGTGAGTTTGAATGCTGCAGAATTCATTCCAAG
GTATGCTGTAGATTAGACTGGTGTTTTTATCAAGTTTGGTGA
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protein sequence of Tc01v2_p010530.2

>Tc01v2_p010530.2 ID=Tc01v2_p010530.2|Name=Tc01v2_p010530.2|organism=Theobroma cacao|type=polypeptide|length=314bp
MEPEAMSCLSEPLTTGDYILKSKLGESSFSTIWKAMSKSSGEVVAVKQVC
LCKLSKHLTNCLDCELNFLSSVNHPNIIRLLHVFQLESCLFLVLEFCAGG
DLASYIRHHGRVQEKIARRFMQQLGAGLEVLQSHHIIHRDLKPENILLSG
SKDDLVLKIADFGLSRRVDPGKYAETVCGSPLYMAPEVLQFQRYDEKVDM
WSLGAILFELLNGYLPFHGRTNVQLLQNIKSCTCLPFSKLILPGLHPDCV
DICSRLLSVNPVHRLSFQEFYQHKFLEQKEWETKSNSHTCEFECCRIHSK
VCCRLDWCFYQVW*
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