Tc01v2_t010410.1

Overview
NameTc01v2_t010410.1
Unique NameTc01v2_t010410.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1278
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 7 ESTs, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productcarbamoyl-phosphate synthase small chain, chloroplastic
NoteCarbamoyl-phosphate synthase small chain, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18611761
GenbankXM_007048186.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g010410Tc01v2_g010410Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p010410.1Tc01v2_p010410.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto22028auto22028Theobroma cacaoexon
exon-auto22029auto22029Theobroma cacaoexon
exon-auto22030auto22030Theobroma cacaoexon
exon-auto22031auto22031Theobroma cacaoexon
exon-auto22032auto22032Theobroma cacaoexon
exon-auto22033auto22033Theobroma cacaoexon
exon-auto22034auto22034Theobroma cacaoexon
exon-auto22035auto22035Theobroma cacaoexon
exon-auto22036auto22036Theobroma cacaoexon
exon-auto22037auto22037Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto22038auto22038Theobroma cacaoCDS
CDS-auto22039auto22039Theobroma cacaoCDS
CDS-auto22040auto22040Theobroma cacaoCDS
CDS-auto22041auto22041Theobroma cacaoCDS
CDS-auto22042auto22042Theobroma cacaoCDS
CDS-auto22043auto22043Theobroma cacaoCDS
CDS-auto22044auto22044Theobroma cacaoCDS
CDS-auto22045auto22045Theobroma cacaoCDS
CDS-auto22046auto22046Theobroma cacaoCDS
CDS-auto22047auto22047Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t010410.1 ID=Tc01v2_t010410.1|Name=Tc01v2_t010410.1|organism=Theobroma cacao|type=mRNA|length=1278bp
ATGGGCATGAAAGCTGTGGATTTTTCGCTTAGAATCAACCCTTCTATTTG
CTTTACTCAAAACCCTCCAAAACCTTCCTCCAAGCTCGTCAGATGCTCTC
TCTCCCCTGACGGTGCCGCCACTGGGTTGGCGGAGAGGCCATGGAAGTTA
GCGGATGCAAGGCTGGTTCTTGAAGATGGTTCTGTTTGGAGGGCTAAATC
TTTTGGTGCCTCTGGAACCCAAGTCGGTGAAGTGGTTTTCAACACTTCTT
TAACAGGGTATCAGGAAATTCTAACAGACCCTAGTTATGCTGGTCAGTTT
GTCCTGATGACCAATCCACATATTGGCAACACTGGAGTAAATTTTGATGA
TGAAGAATCAAGTCAATGCTTTCTTGCGGGCCTGGTGATCAGAAGTCTAA
GTATTAACACTTCAAATTGGAGATGTGCAGAAACCCTTGGTGATTACTTA
GCAGAAAGAAATATTATGGGAATTTATGATGTTGATACACGTGCAATCAC
CCGCAGATTGAGGCAAGATGGAAGTCTTATTGGGGTTTTGAGCACGGAAC
AATCTAAACCAGATGAAGAACTTTTGGAAATGTCACGTTCATGGGACATT
GTAGGTATTGATTTAATAAGCGGTGTTTCCTGCAAATCCCCTTATGAGTG
GGTTGATAAAACAAAATCAGAATGGGACTTCAACTCCAATGGAAGAGATC
GAGAGACTTACAGAGTTATTGCCTATGATTTTGGGATCAAGCATAATATA
CTTCGGCGCTTAGCATCTTATGGCTGTCAAATCACTGTTGTCCCATCCAC
GTGGCCTGCTGCTGAAACCCTAAAGATGAAGCCAGATGGAGTTCTTTTCA
GCAATGGTCCTGGAGATCCTTCGGCAGTTCCTTATGCTGTTGAAACGGTT
AAGGAAATTCTGGGAAAAGTTCCTGTTTTTGGAATTTGCATGGGCCATCA
GTTACTTGGCCAGGCCTTGGGTGGTAAAACCTTTAAGATGAAGTTTGGTC
ACCATGGAGGAAATCATCCTGTTCGCAACCTTCGCAATGGTCATGTTGAG
ATTAGTGCTCAGAATCACAACTACGCAGTTGATCCTGCATCACTCCCTGA
GGGTGTGGAAGTGACTCATGTCAATCTTAATGATAGAAGCTGTGCTGGTC
TTGCATATCCTTCTTTAAATATTATGTCTCTTCAGTACCATCCTGAAGCA
TCCCCAGGACCTCATGATTCAGATTGTGCTTTTAGAGAATTCATAGAGCT
TATGAAGTCAACAAAACAAGCTGCTTGA
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protein sequence of Tc01v2_p010410.1

>Tc01v2_p010410.1 ID=Tc01v2_p010410.1|Name=Tc01v2_p010410.1|organism=Theobroma cacao|type=polypeptide|length=426bp
MGMKAVDFSLRINPSICFTQNPPKPSSKLVRCSLSPDGAATGLAERPWKL
ADARLVLEDGSVWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQF
VLMTNPHIGNTGVNFDDEESSQCFLAGLVIRSLSINTSNWRCAETLGDYL
AERNIMGIYDVDTRAITRRLRQDGSLIGVLSTEQSKPDEELLEMSRSWDI
VGIDLISGVSCKSPYEWVDKTKSEWDFNSNGRDRETYRVIAYDFGIKHNI
LRRLASYGCQITVVPSTWPAAETLKMKPDGVLFSNGPGDPSAVPYAVETV
KEILGKVPVFGICMGHQLLGQALGGKTFKMKFGHHGGNHPVRNLRNGHVE
ISAQNHNYAVDPASLPEGVEVTHVNLNDRSCAGLAYPSLNIMSLQYHPEA
SPGPHDSDCAFREFIELMKSTKQAA*
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