Tc01v2_t009160.2

Overview
NameTc01v2_t009160.2
Unique NameTc01v2_t009160.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1443
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 37 ESTs, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productbifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase, transcript variant X1
NoteBifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18611614
GenbankXM_018113863.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g009160Tc01v2_g009160Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p009160.2Tc01v2_p009160.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto19313auto19313Theobroma cacaoexon
exon-auto19314auto19314Theobroma cacaoexon
exon-auto19315auto19315Theobroma cacaoexon
exon-auto19316auto19316Theobroma cacaoexon
exon-auto19317auto19317Theobroma cacaoexon
exon-auto19318auto19318Theobroma cacaoexon
exon-auto19319auto19319Theobroma cacaoexon
exon-auto19320auto19320Theobroma cacaoexon
exon-auto19321auto19321Theobroma cacaoexon
exon-auto19322auto19322Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto19323auto19323Theobroma cacaoCDS
CDS-auto19324auto19324Theobroma cacaoCDS
CDS-auto19325auto19325Theobroma cacaoCDS
CDS-auto19326auto19326Theobroma cacaoCDS
CDS-auto19327auto19327Theobroma cacaoCDS
CDS-auto19328auto19328Theobroma cacaoCDS
CDS-auto19329auto19329Theobroma cacaoCDS
CDS-auto19330auto19330Theobroma cacaoCDS
CDS-auto19331auto19331Theobroma cacaoCDS
CDS-auto19332auto19332Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t009160.2 ID=Tc01v2_t009160.2|Name=Tc01v2_t009160.2|organism=Theobroma cacao|type=mRNA|length=1443bp
ATGGCAAATTCTCTTCATTCTTCAACAAGCATTTCCCATGTGGGTTTCAG
CTCTCAATTTCTGGGATCAAATTTGGGTTCCAAGGCCTCCGTTTCCGTTT
CATTCCCTTCTTCTCATACCAATTACTCCCTCAAATCTGTTGAGATATTG
AGACAACAGTCATATAGAATAAGTGCAATGTCGAAGGTAGAGAGTAGCAG
CTTTGAGCAAGTGAAAGTTGATATCTCTTTGAGCCCCAGAGTTAATTCTG
TGAAGCCTTCAAAGACTGTGGCTATAACTGATCATGCAACTGCTCTTGTA
CAAGCTGGTATCCCTGTTATTCGGTTGGCAGCTGGAGAGCCTGATTTTGA
TACACCAGCTGTTATAGCAGAGGCCGGGATAAATGCAATTCGTGAAGGTT
ACACAAGGTACACTCCCAATGCAGGTACTTTGGAACTTCGCACGGCAATT
TGCCACAAGCTCAAAGAGGAGAATGGAATCTCTTATACACCTGATCAAAT
TTTGGTCAGTAATGGTGCTAAGCAGAGTATCATTCAAGCTGTTCTTGCAG
TTTGTTCTCCCGGGGATGAGGTAATAATTCCAGCTCCATATTGGGTGAGT
TACCCAGAAATGGCAAGGCTGGCTGATGCAACACCTGTCATTCTTCCGAC
ACTTATTTCTGAAAATTTTCTATTGGATCCAAAGCTCCTAGAGTCTAAAA
TCACTGAAAAGTCAAGACTGTTGATTCTATGTTCCCCATCCAACCCAACT
GGATCTGTTTACCCTAAAAAATTGCTTGAAAGATTTGCAGAAATTGTAGC
AAAGCATCCCAGGCTTCTGGTGCTATCTGATGAAATGTACGAACATATAA
TTTATGCACCAGCAACTCACACAAGCTTTGCATCATTGCCAGGCATGTGG
GAACGGACTCTAACAGTCAATGGATTTTCCAAGGCTTTTGCAATGACTGG
TTGGCGGCTTGGATATATTGCCGGACCTAAGCACTTTGTTGCAGCATGTA
ATAAAATCCAGAGTCAGTACACTTCGGGGGCTAGTAGTATATCACAAAAA
GCAGGAGTTGCTGCATTAGGCTTGGGCTATGCTGGTGGGGAAGCAGTTTC
TACCATGGTGAAAGCATTCAGGGAACGGCAAGATTTCTTGGTTAAGAGCT
TGGGGGAATTGGAAGGTGTAAAGATATCAGAACCTCAGGGAGCTTTCTAT
CTCTTCATTGATTTCAGTTCTTACTATGGAATAGAAGCTGAAGGTTTTGG
TAAAATTGAAAATTCAGAGTCACTTTGTAGATACCTCCTGGACAGGGCTC
AGGTTGCACTAGTTCCTGGAGATGCATTTGGGGATGATACCTGCGTTCGC
ATATCATATGCAGCATCCCTCACCACCTTACAAGCTGCTTTTGAGAGAAT
TAAGAAAGCACTTATCTCCCTGAGGCCTGCTGTTCCTGTTTAA
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protein sequence of Tc01v2_p009160.2

>Tc01v2_p009160.2 ID=Tc01v2_p009160.2|Name=Tc01v2_p009160.2|organism=Theobroma cacao|type=polypeptide|length=481bp
MANSLHSSTSISHVGFSSQFLGSNLGSKASVSVSFPSSHTNYSLKSVEIL
RQQSYRISAMSKVESSSFEQVKVDISLSPRVNSVKPSKTVAITDHATALV
QAGIPVIRLAAGEPDFDTPAVIAEAGINAIREGYTRYTPNAGTLELRTAI
CHKLKEENGISYTPDQILVSNGAKQSIIQAVLAVCSPGDEVIIPAPYWVS
YPEMARLADATPVILPTLISENFLLDPKLLESKITEKSRLLILCSPSNPT
GSVYPKKLLERFAEIVAKHPRLLVLSDEMYEHIIYAPATHTSFASLPGMW
ERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQYTSGASSISQK
AGVAALGLGYAGGEAVSTMVKAFRERQDFLVKSLGELEGVKISEPQGAFY
LFIDFSSYYGIEAEGFGKIENSESLCRYLLDRAQVALVPGDAFGDDTCVR
ISYAASLTTLQAAFERIKKALISLRPAVPV*
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